MmuEX0015748 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34251360-34254198:+
Coord C1 exon
chr1:34251360-34251509
Coord A exon
chr1:34252673-34252906
Coord C2 exon
chr1:34254046-34254198
Length
234 bp
Sequences
Splice sites
3' ss Seq
CACCTTCTGATTCTTCACAGAAT
3' ss Score
9.08
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TCTAAGCTGGCTGTTCGTCATGAAGACTTCTTACACAAACTTACATCCTATTCAGATTGGGTGTCAGAGAAAAGCAGATCTGTGAAGGCCATTCAAACTGTGAATGTCCAAGATACTGAACTTGTAAAGAACAGTGTGAAGTTTCTTAAG
Seq A exon
AATGTGCTAGCAGACCTTTCACATACCAAAATGCAGCTGGAAACGACGGCCTTTGACGTACAGTCCTTCATCTCTGATTATGCACAAGATCTGTCTCCCAGCCAAAGCAGACAACTGCTGAGACTCTTAAATACAACCCAGAAGGGTTTTCTTGACCTGCAGGAGCTGGTAACCACTGAGGCGGACCGGTTAGAGGCTCTCCTGCAGCTGGAGCAGGAGCTGGGTCATCAGAAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAGAGAGAAACTCCAAGGGCTGTGTGATCTCCTCACCCAGACTGAAAACCGCCTAATTAGTAACCAGGAAGCCTTTGTGATTGGAGACGGCACGGTGGAGTTACAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'68-66,'68-64,72-66
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGCTGTTCGTCATGAAG
R:
TGCTTGGACTGGTACTTCTGT
Band lengths:
295-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: