MmuEX0015748 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34194515-34197353:+
Coord C1 exon
chr1:34194515-34194664
Coord A exon
chr1:34195828-34196061
Coord C2 exon
chr1:34197201-34197353
Length
234 bp
Sequences
Splice sites
3' ss Seq
CACCTTCTGATTCTTCACAGAAT
3' ss Score
9.08
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TCTAAGCTGGCTGTTCGTCATGAAGACTTCTTACACAAACTTACATCCTATTCAGATTGGGTGTCAGAGAAAAGCAGATCTGTGAAGGCCATTCAAACTGTGAATGTCCAAGATACTGAACTTGTAAAGAACAGTGTGAAGTTTCTTAAG
Seq A exon
AATGTGCTAGCAGACCTTTCACATACCAAAATGCAGCTGGAAACGACGGCCTTTGACGTACAGTCCTTCATCTCTGATTATGCACAAGATCTGTCTCCCAGCCAAAGCAGACAACTGCTGAGACTCTTAAATACAACCCAGAAGGGTTTTCTTGACCTGCAGGAGCTGGTAACCACTGAGGCGGACCGGTTAGAGGCTCTCCTGCAGCTGGAGCAGGAGCTGGGTCATCAGAAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAGAGAGAAACTCCAAGGGCTGTGTGATCTCCTCACCCAGACTGAAAACCGCCTAATTAGTAACCAGGAAGCCTTTGTGATTGGAGACGGCACGGTGGAGTTACAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'93-81,'93-79,95-81
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGCTGTTCGTCATGAAG
R:
TGCTTGGACTGGTACTTCTGT
Band lengths:
295-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types