MmuEX6023463 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34186819-34197353:+
Coord C1 exon
chr1:34186819-34186951
Coord A exon
chr1:34193392-34193541
Coord C2 exon
chr1:34197201-34197353
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTATCCAATCTTGGTTTTAGTGT
3' ss Score
6.38
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACTGACAGAGGAAGAAAGAAGTGACTTGGAGAAACAGGTGAAAACCCTGCAGGAGGGCTACAATTTATTATTCAGTGAATCTCTGAAACAACAAGAATTACAACCCTCAGGAGAGTCGAAGGTCCCGGAGAAG
Seq A exon
TGTTCCAATGGCTTGCAACAGTGTTTACAGCATACTGAGAAAATGCATGAATATTTGGTTTTGCTTCAAGATATGAAACCCCCCTTAGACAATCAGGCATCTGTGGAGAGCAGTCTAGAAGCCTTGAAGAGTCAGCTGAAGCAGTTAGAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAGAGAGAAACTCCAAGGGCTGTGTGATCTCCTCACCCAGACTGAAAACCGCCTAATTAGTAACCAGGAAGCCTTTGTGATTGGAGACGGCACGGTGGAGTTACAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'87-81,'87-73,91-81=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=0.400 C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGAAAACCCTGCAGGAG
R:
TGCTTGGACTGGTACTTCTGT
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types