BtaEX0012102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3530199-3539751:+
Coord C1 exon
chr23:3530199-3530334
Coord A exon
chr23:3538170-3538403
Coord C2 exon
chr23:3539599-3539751
Length
234 bp
Sequences
Splice sites
3' ss Seq
TAGTGCTACTTTGTTCACAGAAT
3' ss Score
5.07
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
AATGACAGATGAAGAAAGAAATGAATTGGAAAAACAAGTGAAAACTCTCCAAGAAAGTTATAATTTATTCTTTAGTGAATCTCTGAAGCAACTGCAACAGTTGCAAACCTTAGGAGACATAAAGGTAGAGGAGAAG
Seq A exon
AATGTGTTGAAAGACCTCGGACACACCAAGACGCAGCTGGAGACCACCGCCTTTGACGTGCAGTTCTTCATCTCTGAACACGCTCAAGATCTGTCTCCCACCCAAAGCAGACAACTATTAAGGCTCTTAAACACAACTCAGAAGGGTTTCCTTGACATGCAGGACTCAGTAACTACCCAGGTGGAACATTTAGAGGCTCAGTTACAGCTAGAACAAGATCTCGATCATCAGAAG
Seq C2 exon
CTGGTGGCCGAGCGTCAGCAGGAGTACAAAGAGAAACTGCAGGGCATCTGCGACCTCCTCACCCAAACCGAAAACCGCCTCATCGGTCACCAGGAAGCCTTCGTGATTGGAGATGGCACGGCTGAGTTAAAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAAGAAAGAAATGAATTGGA
R:
TCTTGCTTGGACTGGTACTTCT
Band lengths:
284-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development