BtaEX0012100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3530199-3539751:+
Coord C1 exon
chr23:3530199-3530334
Coord A exon
chr23:3537273-3537488
Coord C2 exon
chr23:3539599-3539751
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATGTGTATTTTTTTCTGCAGACA
3' ss Score
10.23
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
AATGACAGATGAAGAAAGAAATGAATTGGAAAAACAAGTGAAAACTCTCCAAGAAAGTTATAATTTATTCTTTAGTGAATCTCTGAAGCAACTGCAACAGTTGCAAACCTTAGGAGACATAAAGGTAGAGGAGAAG
Seq A exon
ACATTTGAATTGGGATTGGCTCCAATTGGTGTGATTTTAAGAAAGGACATGACGCTGGCGGAGGAATTTGTAAAGTCTGTGCCGAGTGACTTCCCCAGGGGACCCCTCGAGGACCTGAGCATGAGCCTCCAGAGTCTGCAGACGGCCCTTTCATCCCTCCAGGCTGTGTCTTCAGAAAGAATGAGCCACATCACGCTGGCGATCGACTCCGAGGTG
Seq C2 exon
CTGGTGGCCGAGCGTCAGCAGGAGTACAAAGAGAAACTGCAGGGCATCTGCGACCTCCTCACCCAAACCGAAAACCGCCTCATCGGTCACCAGGAAGCCTTCGTGATTGGAGATGGCACGGCTGAGTTAAAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAAGAAAGAAATGAATTGGA
R:
TCTTGCTTGGACTGGTACTTCT
Band lengths:
284-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development