RnoEX0030045 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38013538-38023699:-
Coord C1 exon
chr9:38023561-38023699
Coord A exon
chr9:38016380-38016595
Coord C2 exon
chr9:38013538-38013690
Length
216 bp
Sequences
Splice sites
3' ss Seq
TGGATTGTATTTCTTCGCAGACA
3' ss Score
8.59
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
ACTGACAGAGGAAGACAGAAGTGACTTGGAGAAACAGGTGAAAACTCTGCAGGAAGGTTACAATTTATTATTCAGTGAATCTCTGAAACAGCAAGAGTTACAACCCTCAGGAGAGGCGAAGGTCAAGGTGGAGGAGAAG
Seq A exon
ACATTTGAGTTGGGATTGGCTCCAATGGCTGTATTTTTAAGAAAAGACCTAAAGCTGGCAGAAGAATTCTTAAAGTCTTTTCCTAGCGACCTTCCCGGAAGACATCATGAGGAGCTGAGCAAAAGCCACGAACGTTTACAGAATGCCTTCGAGTCCCTCAGCAGTGTGTCCTCACAAAGGATGAAACTGATCACGCTTGCCATCGACACCGAAACG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAAAGAGAAACTCCAAGGGCTGTGTGACCTCCTCACCCAGACTGAAAACCGCCTAATTAGTCACCAGGAAACCTTTGTGATTGGAGATGGCACGGTGGAGTTAAAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.139 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACAGAGGAAGACAGAAGTGA
R:
CTCTTGCTTGGACTGGTACTTCT
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]