RnoEX0030046 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38013538-38023699:-
Coord C1 exon
chr9:38023561-38023699
Coord A exon
chr9:38015998-38016147
Coord C2 exon
chr9:38013538-38013690
Length
150 bp
Sequences
Splice sites
3' ss Seq
CATAATTTTTTGTTTTCTAGTCT
3' ss Score
7.82
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
ACTGACAGAGGAAGACAGAAGTGACTTGGAGAAACAGGTGAAAACTCTGCAGGAAGGTTACAATTTATTATTCAGTGAATCTCTGAAACAGCAAGAGTTACAACCCTCAGGAGAGGCGAAGGTCAAGGTGGAGGAGAAG
Seq A exon
TCTAAGCTGGCAGTTCGTCATGAAGACTTCCTACACAGACTTACGTCCTACTCAGATTGGGTGTCGGAGAAAAGCAGATCTGTGGCGGACATTCAAACTGTGAACGTCCAAGATACTGAACTTGTAAAGAACAGTGTGAAGTTTCTTAAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAAAGAGAAACTCCAAGGGCTGTGTGACCTCCTCACCCAGACTGAAAACCGCCTAATTAGTCACCAGGAAACCTTTGTGATTGGAGATGGCACGGTGGAGTTAAAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_MULTIEX1-5/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTGAAAACTCTGCAGGA
R:
ACTTCTTTAACTCCACCGTGCC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]