MmuEX0015747 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34250850-34252906:+
Coord C1 exon
chr1:34250850-34251065
Coord A exon
chr1:34251360-34251509
Coord C2 exon
chr1:34252673-34252906
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGCATAATTTTGTTTTCTAGTCT
3' ss Score
7.63
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GCCTTTGAGTTGGGATTGGCCCCCATCGCTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTCTTAAAGTCTTTTCCTAGTGACCTTCCCAGAAGACATCATGAGGAACTGAGCAAAAGCCACCAACGTTTACAGAACGCCTTCTCGTCCCTCAGCAGTGTGTCCTCAGAAAGGATGAAACTGATCAAGCTTGCAATCAACTCTGAAATG
Seq A exon
TCTAAGCTGGCTGTTCGTCATGAAGACTTCTTACACAAACTTACATCCTATTCAGATTGGGTGTCAGAGAAAAGCAGATCTGTGAAGGCCATTCAAACTGTGAATGTCCAAGATACTGAACTTGTAAAGAACAGTGTGAAGTTTCTTAAG
Seq C2 exon
AATGTGCTAGCAGACCTTTCACATACCAAAATGCAGCTGGAAACGACGGCCTTTGACGTACAGTCCTTCATCTCTGATTATGCACAAGATCTGTCTCCCAGCCAAAGCAGACAACTGCTGAGACTCTTAAATACAACCCAGAAGGGTTTTCTTGACCTGCAGGAGCTGGTAACCACTGAGGCGGACCGGTTAGAGGCTCTCCTGCAGCTGGAGCAGGAGCTGGGTCATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'67-64,'67-61,68-64
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCAGTGTGTCCTCAGA
R:
CCTCAGTGGTTACCAGCTCCT
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: