BtaEX0012101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3530199-3539751:+
Coord C1 exon
chr23:3530199-3530334
Coord A exon
chr23:3537674-3537823
Coord C2 exon
chr23:3539599-3539751
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACGCAATTTTTATTTTCTAGTCT
3' ss Score
6.4
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AATGACAGATGAAGAAAGAAATGAATTGGAAAAACAAGTGAAAACTCTCCAAGAAAGTTATAATTTATTCTTTAGTGAATCTCTGAAGCAACTGCAACAGTTGCAAACCTTAGGAGACATAAAGGTAGAGGAGAAG
Seq A exon
TCTAAACTAGCCGTTTCCCATGAAGAGTTTCTGCAGAAACTCCAGTCATTCTCATGTTGGATATCGGAGACGAGCAAATCTGTGAAGGATGTGGAGATCATGACAGTTCGAGATGCTGAACTCATAAAACAAAGCTTGGAGTTTCTCAAG
Seq C2 exon
CTGGTGGCCGAGCGTCAGCAGGAGTACAAAGAGAAACTGCAGGGCATCTGCGACCTCCTCACCCAAACCGAAAACCGCCTCATCGGTCACCAGGAAGCCTTCGTGATTGGAGATGGCACGGCTGAGTTAAAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAACAAGTGAAAACTCTCCA
R:
TTCTTTAACTCAGCCGTGCCA
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development