MmuEX0015747 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34194005-34196061:+
Coord C1 exon
chr1:34194005-34194220
Coord A exon
chr1:34194570-34194664
Coord C2 exon
chr1:34195828-34196061
Length
95 bp
Sequences
Splice sites
3' ss Seq
CAAACTTACATCCTATTCAGATT
3' ss Score
6.72
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GCCTTTGAGTTGGGATTGGCCCCCATCGCTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTCTTAAAGTCTTTTCCTAGTGACCTTCCCAGAAGACATCATGAGGAACTGAGCAAAAGCCACCAACGTTTACAGAACGCCTTCTCGTCCCTCAGCAGTGTGTCCTCAGAAAGGATGAAACTGATCAAGCTTGCAATCAACTCTGAAATG
Seq A exon
ATTGGGTGTCAGAGAAAAGCAGATCTGTGAAGGCCATTCAAACTGTGAATGTCCAAGATACTGAACTTGTAAAGAACAGTGTGAAGTTTCTTAAG
Seq C2 exon
AATGTGCTAGCAGACCTTTCACATACCAAAATGCAGCTGGAAACGACGGCCTTTGACGTACAGTCCTTCATCTCTGATTATGCACAAGATCTGTCTCCCAGCCAAAGCAGACAACTGCTGAGACTCTTAAATACAACCCAGAAGGGTTTTCTTGACCTGCAGGAGCTGGTAACCACTGAGGCGGACCGGTTAGAGGCTCTCCTGCAGCTGGAGCAGGAGCTGGGTCATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'92-79,'92-78,93-79
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGAGCAAAAGCCACC
R:
TACGTCAAAGGCCGTCGTTTC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types