GgaEX1021124 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89826473-89837595:+
Coord C1 exon
chr3:89826473-89826608
Coord A exon
chr3:89833756-89833971
Coord C2 exon
chr3:89837443-89837595
Length
216 bp
Sequences
Splice sites
3' ss Seq
AATATATATTCTCTTTGTAGTCA
3' ss Score
6.38
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
AATGACAGATGAAGAGAGAGGTGAAATGGAAAAACAAGTCAAATCCCTCCAGGAGAGCTACAGTTTGTTATCCCATGAAGCTTTGAAGCAGCTGCAGGAAGCACAGTATTTGGATGATGAAAAGATGGAAGAAAAG
Seq A exon
TCATTTGAATCAGGATTGGCTACCTTTGCAATTATCCTAAAAAAGGACATGAAGTTGACAGAAGAGTTCTTAAAGTTTCATCACAAAGACATTCCTGAAGAGAAACTTAAAGAGCTAAAGATAAGCTATGACTATTTGCAGGAAGCATTTTTGATGGTCTGTGATACATCTTCAAAACGAGCAAAACAAATAGTCTGTTCTGTTGACTTGGAAATG
Seq C2 exon
GACGTGGCTGAACGGCAGCAAGAATGCAAAGAGAAACTGCAGGAAATATGTGATATGCTTACACAGACTGAAAATCGACTTATTGGACAGCAAGAGTCTCTTCTTATTGGAGACAGCAAGGCTGAGCTAGAACAATACCAGACCAAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'39-48,'39-45,47-48=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.000 C2=0.245
Domain overlap (PFAM):
C1:
PF0068115=Plectin=PU(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGATGAAGAGAGAGGTGA
R:
CTCCTGTTTGGTCTGGTATTGT
Band lengths:
287-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]