GgaINT0079299 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89829806-89832767:+
Coord C1 exon
chr3:89829806-89831950
Coord A exon
chr3:89831951-89832088
Coord C2 exon
chr3:89832089-89832767
Length
138 bp
Sequences
Splice sites
5' ss Seq
TGGATAAGA
5' ss Score
0.72
3' ss Seq
CTTTCCCCCAACTGTTTCAGTGA
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATACTGAATACAGAATTCCAGAAGAATCAGATAGTAAGTGTGGTGACACACTACAGTTTGAAGGTAATGAATATAGTGAGCAACCTCTGCTGGACTACACTGATGTGCATAACAGGCCATCTCTAGAGAGCTGTCCATATAGTCATGGCAGGCAGTCTTTGGACAGTAGTACTGATTTCCAGAGTAAGCTATGTCTAGAGGACAGTAGAGAAATACAATGGAGGCCTTTGTTGGAGGCCAATACTGGTACACATGATGGACCACCTGAGGGGGTCAGTAACAGCACAGCTCAAAGCCTACCAGTAGAAGAAAACAATCTTGTATTTGACAAGTTATTACCTGGGGACAGTAGTTCTGACTCTTCACTAGAAGGGAGTGATAGCATCCCACAGTTTGAAAGTAGCTGCTCACAGCATGAATGTGGAGAGGCAGACTCAGAAGAGGACAGCTCGCAGTTTGATGATGATGATGATGCCTATGAAACTCCTCAAGTTGATGATGATGACAGTGATGTCTATGGTACTCCACAATTTGATGACAATGATTCCTATGACACCCCTCAAGATGATGCTGATTTTGGTACCTTACAGCTGGAGGATGATGATACCCCAGAACCAGAGAATGTTCCGTTAGGTTTTCTAGAGGAGAGAGGTGGTCTGATAGCTCTGAAAGGAGAGAACAGCTCTTATGAGGAACTTCCGACTAATGCTGGAGAGAACGTCCATTACATTAGAGATATAAATCAGACGGCTCTAACTGAGGGTGTTAATGTAGCTTCTGCAAGTGAGGAAACTCTGGAAACAGTCTCTGAAGAGGAAAGGGAAAGAACAAGGGACTTTGAAGAGGAACAAAAATTAACAGTTACTCTGGGCAGTGAAGAAAGAAGGGAGGGATGCTCTACTTCATTACTGAAGAGGTATGTAACAAAAACACAGCAAGACAGAAATGAAGAAGATGAAATGAAAGCAGAAAGTGACTGCTATGAGTATGAATCAGAAGGAACACAGGAGGAGGAAGACTATGATTATGACTATCTGGATTATGATAGTTACGATGACTCTGATACTGAGTCTGACAGTGAAGAAGAAATGGATACTTTTTACTCACATCATCAGTGTGAAAACAAAGATGACCAGATGTTAAATTCTGCAGGAAACATAGAAAATAGTGAGGAAAATAATCAGAATATTGATGACTATTGCTATTCTTTAGGCCACAAGACAGAGTATAATTTGCAATTCCTGGCTAATCGCGGAAATGGAGAACTATCTTTGGGAAAATGTGAAACTGCATCAGATATCTGTGAGGAAAGATGTGTTGATCTTACGTGTACAGGCAAAAAAGAAAGGGAACAAAACCCAGAAAATGACTATGAAACTTTTACTAAACGTGAAAACATGTCAGAAGATACTACTGAGCATATTGAGTCTGAAAATACCTTTGACATCAAATGTATATCCTGTAAGAGTGAAGAAAATAATAAAACACACTTTCTTGATGATACTGTGGTATCTGACGTTAGTGCAACACCCTTCCTAAATGCAAAGCAAGCTACTGGTGATGATGAAAATGCTCAGACAGATTTGCTTCTATCAGAACACTTTATTCATAGCATGAATAAAAGCTGTAGTACCATGCCAATGTTACAGTTAGATCATGGGCAAAGACAAAAAGAAGCAGTATTTGTGGAGGAAAAAACATTAAATGATGTGACTGGTTTGGAACAACTAAAGGCAAGTTCATCCCAAAAGGACAGTAAATTCCTCACAGATATGCATTATGCCAGTGATGATGTTAGTTCACTTTGTGACCAACTACATCCAGTTACTGACAAGAAGCATGGTCAAATAAGAAGAGATTGTGAAGTTCTGGCAGAAAATGAAGTAAATATTACAAAGGAATTTGGTGTCATGGAGCTAAATAAAAGTCCCATTCATATGGAAAGTCTTGGGGAAATATTTGATGCATCAACAATTAAAGCTGATACAGAAACTGTTTCAAATAACGAGAAAGTAAATATTGGTCAAACTTGGCCTGACGTTGGAAGTGGTGTGAGATCAGCTGAATTTAAGAGAGATTTTAATCTTTCATCTTCTCTAGAACAATGTAAAACAAGCTTAAAAGGAGAAAACAATTCAGAATTGG
Seq A exon
ATAAGACTGAATCCTGTTGCCTTAAGAACATAGAACAAGTGAAAAATGGTATTCAGAATGAAAAAGAATTTCTGCTCAATATGGAAGAAATACATTCAAGTGAATTTAACACTTACTCCTTTCCCCCAACTGTTTCAG
Seq C2 exon
TGAAGCCAAAGGAAATTAGCATGACTAAAGAGACGTTTATCTGTCAAAGTGCTGACAATGTTCTTAAAGACATTTCAGAAAACAAGAACAGCAATGATGATGAATTTACCCTCATAAAAGCAGGTGCCTTAGGAAGCACTGAGGATGCAAAGGAATCAGGGATTGAGATAGAAGTGCTACCTTCTGGGAATCATACACGTACCACTGATCTTTCTTCTGCAATTTTGAGCAGCATAGAGGCTGACTGGAATAATGTTGCCCAGAAAGAATCTGAAGCAGTGAAAAACACTAAGGGAGAAAAGTTCATGGCCAGTGAGACTTCTTCCTTTGAAAATGGTTTCAAAAAACAATTATGCATGGAATCATTACAAAATGATATGGGACCTTCTAAAGCCTTTCAAGTAACGGAAGGTTTTTCACAGTCACCAGAAATGCCTGACACACTAATGGAGGACTTAAAGAATATATTACAAAGGAAATTAAAATTGGGACATACTTATAGCAAGCAGGAAGGTGAACCACTAAGTTACTCTGATACCAAAATTCTAATGCAAAATTTACTTAGAATGGTTGGAAGCACCGAGCTTGGAAGCAGCATGTCCAGTGAGTCACAACTCAAGCAAACAAGCAGTACTGTTACTGAGGCATTAATGGATACCACACTGTGCACAGACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=NA C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGGCCTGACGTTGGAAG
R:
GCTTCCTAAGGCACCTGCTTT
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]