GgaEX1066298 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr3:86434404-86445526:+
Coord C1 exon
chr3:86434404-86434539
Coord A exon
chr3:86443292-86443525
Coord C2 exon
chr3:86445374-86445526
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGTCTTTACTTACAGAAC
3' ss Score
10.41
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
AATGACAGATGAAGAGAGAGGTGAAATGGAAAAACAAGTCAAATCCCTCCAGGAGAGCTACAGTTTGTTATCCCATGAAGCTTTGAAGCAGCTGCAGGAAGCACAGTATTTGGATGATGAAAAGATGGAAGAAAAG
Seq A exon
AACACCGCTGCAGAGGTTGCTCGTACAAAAATGCAACTGGAGTCCACTGCATTTGATGTTCAGTTCTTCATTTCTGAACATGCCCAGGATCTTTCTCCTAATCAGAGCAAACAGCTTCTGAGGCTCTTAAATACCATTCAGAAATCTTTTCAGGAAGTGCAGGAAACTGTAACATCTCAAGTGGAGAGTTTAGAGACTCAGTTACAGGCAGCGCAAGAGCTGGGTGATCAGAAG
Seq C2 exon
GACGTGGCTGAACGGCAGCAAGAATGCAAAGAGAAACTGCAGGAAATATGTGATATGCTTACACAGACTGAAAATCGACTTATTGGACAGCAAGAGTCTCTTCTTATTGGAGACAGCAAGGCTGAGCTAGAACAATACCAGACCAAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_MULTIEX3-5/5=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGATGAAGAGAGAGGTGA
R:
CTCCTGTTTGGTCTGGTATTGT
Band lengths:
287-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]