GgaINT0081225 @ galGal3
Intron Retention
Gene
ENSGALG00000010583 | VIT
Description
NA
Coordinates
chr3:33401135-33404045:-
Coord C1 exon
chr3:33403998-33404045
Coord A exon
chr3:33401198-33403997
Coord C2 exon
chr3:33401135-33401197
Length
2800 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCTCTCCTCTGTCTCTCCAGGTT
3' ss Score
12.77
Exon sequences
Seq C1 exon
CAATAGAAACAGACTTGTGGAAACCTGGACTGAGCTTTTTTGACACAG
Seq A exon
GTAAATATTTAAAGCATTTGGTAACCAGACTGGGAATTATTGTTTTCCGTCACATGTGGGGAAAGCTCACACTATTCATCAGGCCCATGGCATTGCTCATAACAATCTCATTCTAAGAAGTAATTACGGTATTTAAGAAGGCAAATGAGGTATGTCGTTTACATCTTAGTAGTTAAAATTATTCTGAGCCTTCATCATTCCCAAGTTCCTGCCAAAAGTGAGAGCAGAACAGATGAGCTCTGGAAAGAGTTGGCAGTTGTACTGCAGGAAAGGGGTTCTAGCTACTGAAATTCACTTGTAAATAAGAAGGTATTTTGGGAATGCCACAGCTGGGAAAGCAGTCTAGAAATGCCATTAATGAAAAAGATGGCAAATTATTCTGATGCAAATGTACTTAAGAAGGAAGGGCGTTCAGATGAGAATGGGGGATTAAAAAAATAGTAGGTATTACTGAAATTTTCTAATGTTTTAGTCTTAAAATGAGAAGACAGCATTTTTAGAGCTACTGGTGAGTGAGGAAAAAAAACCTTATATTCGTAGCAGGCTCAAGAGGCAGAAGATCAAACCTGAGCAATTCTTATCCAGGTACAGTTTGCAAGTGCACATCCCACACGTTCAGCATTTAAAGGATCTCTTTCCTTAAGAACATTTAAAGTAGACTATGCAAAATCTCCTATGCAAAGTCCATGCAAAGATACGGCAATTCATCATACAGTGCTCTTACGAGGAGCTGGACCATCCAGTATAAGGCATCTTTTCCATCACCAGTTTTGCTGCTGGAGAGGGCTGTGCTATGTTGGTGGCCCTTGCAAAGACCATCCCCCCACACACCCAAAGCCGAGGTGTGACTAATCCTCCCACTGGCTGCTACTAGCAGTGTTGCCTATTTGCATTAGCTTGCAAATCCAGTGGCAGTGGCTCTTCAGTCAAAATTTGCATCATCTAAACGTGAGCAGATTTCCCTTCTCCAGGAGTGGCACTCCTAGCCAGAGAGAGAGCATGTTTCTATCCAGCCTTCAGTGGGTTTAATGAAAAAAGCTGCACTGCAGTGTACAGGGCCAGTGGTGCAGAGGAGTACCCTGAGACAGCAAATGACAAATTGCATTGAATGGAATGAAAGTTTGGGTGTGGGAGAAGGGACGTTGTACTAGCAGTTTCTCACAAACTGAAGCGTCTGTGTGATAAAGTCTGGTGAATTCAGACTGTCACTTCAAAGGAATGGCTCCTGGTGTGCATGTAGTCACTGCTGTCTTGCTACAATGAATAGGGAGTTTAATCAGCATGGACAGCTGTGACAATCAGTGAAGAGAACTTTTATTAGCATGGAGTAGGCTGCCCATGCAGTGAGTTGAAATTCCCATGGCAGTAACAACCTTGAATTGGACTGGCAGAACCCACAGATTCTGACCACCTCCCCAATTAGTGGGGAAGGTTATTCGGTGGGTGACCTTATTGTTAGAGTGAGCACAAAGCAGCCTGCTGACCCACAGCCTCCAAGAACAGCTGGTGGCACCAGCAGCCAGAATGAAGAGTGCCATGGTGCTCAGGTGTGCCGTGCTGACAGAGCTCATGGCAGCTTTGGGTATGGACTGTGGATTTTACAGAGCACAGACACATGCATGAGGAGGATAGCTGTGAATTAATTTCCCCATCAAGTTTGTCTGCTAGAGCGAGAGGTGTGTGTTAGTATCTAACCTCACAACAGCCTTTAATCCACCTACCTCATGACCTGCAATAAGGTAAGCGGGAGAGCAGTGTGTATGTGCTGCCAAGCTGGCATGTAGTGTTGGAATGTAGTACTGAGAGGTGGAATGTGGCTTTGGTCTGCTACTGAGGGAAGTTACACACCTGTGATTAAAGGCTACACTGGAGTACATACAGTCATGAGGACAAGCTGCTGAGTATTTCAGGTTTTAAAGAAAAAAAATGAACAAGAAATGAAATGGGGCTAACCTTAATGCCCTTTTCCTACCTCGTTCATATGGGAACATCCAGTGTCCTTCACAAGGCCACGCACAGTGCCCAGCCAACGCAGTATCCTACCCAGTGACAGACGCCTGGGGGTGAGAAAGGCAGAGGGTAGTCACACAGGAACGGAACTGGCAGGGCTGGTTGATCACTGCCACAGAAGGTATCTCACTCACTGCCAGCTGAATTTAGAAGTGAGAGGCCAAAGCAAGACTTCTGCCCAGTAATGTCCCAGCAGCACGCTATAGCCACACACAGGGAGTCAGGTGTCAGGTCAGACACCAGTTTGAGGACATAGCCTCAACAAAACCTTGTCTCCTGACCCAAAACTGCACACAGCTTCATCATGCAGGGGAAACAGCTCCAAGCAGTTGTATTCTTGTGCTCATTCCCATGAGAGGAGAGTTGGTAGATGTAAATAGAATGGAAGGTAGACTGGTGGGAGTTGGAATTTCCTGTTTTCTTGAATATTTTCTGCACTGTTATGGCTCAGTCATTAATAACTCCAGCAGCCAGCTGAAGTGGTGCACAAACTCAGAGCTGTTACGGCTGCCATCAGATTCTGATAAAGCCCTCTACTGATGTCCCTTGGCCACCCACTGTCTTTACACATGCAGTACTCTCACAATGGGGCTACTGGCTGCCCTGGCAATGGAAATGGTAGTTACCAGGACTTGCTGCCCACCCGCACTTCCCTCTCACATTTAGCAGCTTCAGACTGCAGGTGCTCAGCAGCAGCCCGGGGGCTCCCTCCAGGCACCCCCACAGACACCCAGAGCTGGGGCAGCCTGGCACACCTCAACAGAGCCTCTCCTCTCCTCTGTCTCTCCAG
Seq C2 exon
GTTTTGCTTCAAAGGAGGAACTGAACCTGAAGCCACTGGAGGCGACCTCCCAGGGGAACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583:ENSGALT00000017224:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF115933=Med3=FE(5.5=100)
A:
NA
C2:
PF115933=Med3=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]