HsaINT0180290 @ hg19
Intron Retention
Gene
ENSG00000205221 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:12697]
Coordinates
chr2:37008870-37010545:+
Coord C1 exon
chr2:37008870-37008914
Coord A exon
chr2:37008915-37010482
Coord C2 exon
chr2:37010483-37010545
Length
1568 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
AGTTTTACTGCTCTTTCCAGGAC
3' ss Score
8.24
Exon sequences
Seq C1 exon
GAGAGATGGACTCATGGAAACCTGGATCGGTCCTTTTAGATGAAG
Seq A exon
GTAATTATACAGCCCAACCTCTCAGCCACGCGTGGATCAAGATGCGCAGGATAGCAGAACTAAGAGTCTAATAATCCAGCTGGCATAGCGGCCGAGCTCCACTAGCCTAGGATTTCTAATGGCTCCCGCCTCTGATTTAAGGGTCCTACAAAGGGCACATTGAAACTCCCTCCCTAGGGAGGCCTGGGGTAAGGGGCAATATTGGATAACAAAAGGGAGAGAGGAAACGTGAAGACAAAAAGCCAGAAGGGAGCTAGTTTCCCACCCTCAAAATGGGTTTGGACCCTGACTCTATCTGGCAGCACACTTTAACTTCCTCCAACTCCACTTCCTCCTTTGCAAAATGGCTTTCAGGTTTTCCCTTCACGAGAATGGGTGTTGTTTGCTGCGTACTGCATTAAATATTTGAAACTCCAACACACAAGACCTTCCAGCTCTTCATGGGAGGGAAGATTGTACTGGTAGGGGAAGAAGGAGGTGAAGGAGAGGACTCCGCCTCTGGACTTGTACTTCTCCCCTTCCTCCAACGCAGAGTCTTGGGGCGTTTCCACGACAGGCTCCTGGCTGAGAAATGCTGTTAGCCACCCAAAGTGAATGTTTAAAATGATGTGAGGAAGTGGGATGAGCTAGCTGACCTTTAACGGAAGGATGAAATCATGTGCTTTGCAAACTGGAAAAAATAACAAGCCAGTAGAAAGCTCACTGCAGCCAAGCGCGAGCGAAGACCCCCGCACCTTCCTCCACTCCGGGGAATCCCGGAACTTCCGGGCCTCCTGAAAACGGGGAGACTCACTTCCAGTGCTGCAAGCGTGCTCTGCCTGGGAAGCCCATTCGTGTTACCAAGCCTAAAAGGATTCGCTTTTATTGTCTTTATTTCTTTAAATGGTATATTTATGAACTTGGCTCCCATGTACATGGCTCTAAAGACACCCCCTTCCCCAAGGCTGAAATGCAACTCACACACACAGCTTCTGAGAGCATGAAACCTTTTTGAATCTCTACTTCTAGTCTCAAACACCTGGGAGGGAGGAGTTGCATTTTAAGCCCTCTTATGTGAGTTACTTTTAAATAAACTGTCTTCCTCCAGTCCACATCCAATCCTCATTAGATTGTCCTTCTTGTGCCTTACTCATCTTCGTTCATTGTGTCAATCACCAAATGTTGACTGAGGACCTACATGATCTTGGCACGGTGGAGGTTTATTCGAGCAAGACACATTCTGTGGCTCAAGATTTTCAGAATTTTACAGAGACATAATTTACAATGGCCAAGTGCTTAACGCTTTCAGATGACAAAACTAAGGCTCAGAATAAAGAATAAATTAACAAGAACAGAACTCAAGTCTCCTGATTTCAAATCCCCCAGCAGAGTACTATGTTTTTGATAGGCTGTAAGTAAATATTAATTTATTATTTTTCTCAGGATGGGGGTGATGTGAAAAAAAGCACAGTTAGCTTTAAGCCAAGCCCCCAAGCTGGGTGTGAATATCCATTATGTCCCCTCCCATGGGGTAAGGCCAGCTGCTTCCTTTCCTTGTAAGTCACCAAAAGTTTTACTGCTCTTTCCAG
Seq C2 exon
GACTTGTTCCAAAAGAAGAATTGAGCACACAGTCTTTGGAGCCAGTATCCCTGGGAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205221-VIT:NM_053276:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)