MmuINT0173023 @ mm9
Intron Retention
Gene
ENSMUSG00000024076 | Vit
Description
vitrin [Source:MGI Symbol;Acc:MGI:1921449]
Coordinates
chr17:78999164-79001246:+
Coord C1 exon
chr17:78999164-78999208
Coord A exon
chr17:78999209-79001183
Coord C2 exon
chr17:79001184-79001246
Length
1975 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCTTTTGCTTCTCTTTCCAGGAT
3' ss Score
11.76
Exon sequences
Seq C1 exon
AAGAGGTGGACGGGTGGAAGCCTGGACCAGTCCTTTTAGATTCAG
Seq A exon
GTAAGCATCCAGCTGACCTCTTCATACCGATCAGACCAGATGCACAGCATTGAAGAATCAGGAGGAAATAACAGCTCAGCCGGTGGCTCAGGTGGTCCAGCCTAGACAGAGAGGTTTTTCTGAAGAGTTTCTCCAGGGACTTTCAGGTCCAGGGATGGGGTTACCAAACTTTCCTAAGGATACCTGGGCAATATTGGTTTCCCAAAAGGGAAAGAGAAGGCAAAGGCTGGAGTATGTGATTTCACTGCAAGATGGGTTTAGACCCTCGCTTCTCCTGGCAGCACGCACTGAAGTTCTTTATTAACGTCTGCTTCTGTGAGAATGGTATTCAGAAGGGCTGCCTGGCGGTGCTGCATGCCTTTAGTCCCAGCACTCAGGTGGCTAATGCAGGTGAATTTCTGTGAGTTTGGGGCCAGGCTGGTCTACATAGTGAGCTCCAGACCAACCAAGGCTACCTAGTAAGACGTTGTCTTAAAAGTTTAAATTAAAATTTTAAATAAAAATTTTAAAAAAGAAAGAGAGAAGCCGGGTGTGGTGGCGCATGCCTTTAATTCCAGCACTTGGGAAGCAGAGGCAGGTAGATTTATGAGTTCAAGGCCAGCCTGGTCTACCCTGTCTCAAAACAAACAAACAAACAAAACAAAAAACAAAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAACATGGTATGACGTTTTCCATTCTCATCAATGTGTGTGTGTGTGTGTGTGTGTGTTTAACTGAATACCACATTCAATATTTGACCCTCTAACAAAGCCTTCGAAGCAAGGTGAGACAGGGATACGAAAGACCAACCTCTAAACTTAGCACTAAGTACACACACACACACACACACACACACACACACACTATAGTAGAGCATTGAGACATGTCCTTGCAAAGCATCTGGCTGAGAAATACCGTTAGACACCAAAAGAGTATTTCCAAATGACGTGAGGAGGTATGGAGAGCTGGCTGACCTTTAACAGGAAAATGAAATCACACTGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCACTTCCACACCTGTTCCCACTGCTGGAAACTTCCAGAACTAGGCCTCCTGAAAACTGTTTCCTGCACATGTTTGCTGCCTCTGAGAAACTCGCTGGTCACAGCTATCCTAAGAGATCCGTGCTTATTGTCACCCTCTGTGTGCCCAGCCCTAACAAGCGGCCCCACCCCTGCCTAGCTGAACCTCACCCTCATACAACCTCTCCAAACATGAGCATTGTGTATCTCTGTCTCCAGCCTTAAGGTGCTGGGGGCGAGAGGCTGTCTTCTCTGCCCTTCTACTTGAACTGTGTTCCTCTCTGGGGCCCACACAACCTTTTCCAGATCGCCCTCACACATCTAACTAAACGTCTTTGTTTAGTGCCTCTGTCACCCAAATTTAGCCAAAGACCCATAGGTACTGAGCAGAGGAAAGCTTTGGACGAGACAAACTCACTTCTCCTGACCTCAAATTTTTCAGAATTTTAGAGAATAATCATTTATACCTACACATCTGTAATGTTTTCACATAAATAAACCAGAACTCAGATAGAACGAATTAAAACGAGAGCGGAACAGAGCCCCCTGAAGACCCAACAGCACCCTTGGGCGGGCTGTCGGTACTTAGGTTCCTCAGGATGGGCCCTGGGTAGAGAAGAGGCAGCTGGAAGCCAAGACCCAGAGCTGGGTATGAATGTCCGCTCTGTCCCGTTCTCTGGGGGTAAGGCCAGGCGCTTCCAAAGCTTGGAAATCACAGCAGCTTTTGCTTCTCTTTCCAG
Seq C2 exon
GATTTGTGCCAAAAGAAGAACTCAGCACACAGTCTTCGGAGCCAGTGCCGCAGGGAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024076-Vit:NM_001197028:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: