GgaINT0081359 @ galGal3
Intron Retention
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18844334-18844897:+
Coord C1 exon
chr3:18844334-18844370
Coord A exon
chr3:18844371-18844831
Coord C2 exon
chr3:18844832-18844897
Length
461 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TGGTCATCTCTTTCCTCTAGCCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GATGATTGGTGATACGGTGGCTGCAAAACCATATGAG
Seq A exon
GTAAACACTGTAACTAGACAGACGTTTTTTGTAATAGACTTTTCTTCCACATAGTGGGGAAAAACAGATGTGAGATTTTTTTCTCCTGAGCTGAGATCGTGTTAGGTAAACACCTACTATGTACTTTGTGCTCAGGGAAAATGGAGTTTGGTTACAGAGATTCTTCACTTGCCTCTGTGGCTTAGCTTCACATGCATTTTCACGTACCTGGGCTCATGTGGCACAAAAACTGCACACATCCAGACCTGGTTGAAACACATGAAGCTGGCCTTCAATCAAGTACCGGTAGAAGATGGGGAGGGCAGTGAGTGATCTAAGGATTTAGGGAATGCTTCTGTCTTGATATTCATGTAGAGCAAGCTCTCTTTTTCCCATCCATCATAAAGCTCCTTTATGATATCCATGTCTCCCTTTTAAGAACCATATTGTAAACCACAATCTTGGTCATCTCTTTCCTCTAG
Seq C2 exon
CCTCATGTTGATAACAAAGATATAGATGAAGAGTTCAAGACTCTATTTCAAAAACTCTCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382:ENSGALT00000015288:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]