GgaINT0081360 @ galGal4
Intron Retention
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17067397-17068406:+
Coord C1 exon
chr3:17067397-17067462
Coord A exon
chr3:17067463-17068348
Coord C2 exon
chr3:17068349-17068406
Length
886 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAAACATGTTTTCTGTCCAGGAC
3' ss Score
8.63
Exon sequences
Seq C1 exon
CCTCATGTTGATAACAAAGATATAGATGAAGAGTTCAAGACTCTATTTCAAAAACTCTCTGGAGAG
Seq A exon
GTAAGTGGATTAAAATGAAAGGAAAAAAAGTGGGACCTCTAGCCGTTATGATTATGCAAATATTTGGCCCGCCAGTTCCTCTTTTTGTCTGGTCTTCAAAAAAACAGGCAGTTCTCCCCTTTTATTAACTCACAGCTTCAATTCAATTTATTTTACAATAGAAACAGTTCTACTACATTTTTCCTCTTATTGATGCAAAATGTGATTTTTTCACTCAGCAACACTATGACTTTGAAAATATGGGTGATGGGAGTGAGGACTATGAAAATATGGTGAAATAAATTGCCTGTGGAGTTAGCATATAATTCTAACAATTGGCTATTTGTTCAATTGCTTCCTTTTTGTTTAGAAGCCCCAGGAATCAGAAAGCTGACGGCAGAACTTTCTGTTATTGTATTTTTGTATCTACAAAACCTGCTGTGCCAGCCTACGGCTGCCTCTTCAGATGTGCTCTTAATGAACAGGTGGCCAGTGGCAGTCGAGGGGGAAAACATCTTGTTAGTTAGAGAAGCATTTGTGACTTTTGAGATGGGAATTTTAGTATTGTTTGACTGCAGTATCCGTAAGCCTAAAAAATCTCAAATGCTCTCCTGAGTCTTTTTAGCTAAGAAAGGAACAAGAGCAATGATCCTGCTCAGTCAAATCTGATAAAAAGTTAACATTTATTGGGCCACATCCTCATGGCAGTTAACAAACCACTTGTTTCCCACCTGAAATGCTAGGAAATATTCATGGTTTCTGAGGATCTCCTTCATGTGATGTCAGCAGGTAAATGTAGAGTTAGAAAAAGATCAATGATTTTGCCCTAGAGTATGGTGACAGTGAATGAGTATAGTCCGCCTCAAATGCTTTTCATCTTAATGTTTTAAACATGTTTTCTGTCCAG
Seq C2 exon
GACTGTGAAGTGACTGCAACTGAACTTCAAACTATTCTAAATAGGGTTTTGGTGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382:ENSGALT00000015288:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]