GgaINT0081586 @ galGal3
Intron Retention
Gene
ENSGALG00000009925 | MTA3
Description
NA
Coordinates
chr3:25119430-25121938:+
Coord C1 exon
chr3:25119430-25119546
Coord A exon
chr3:25119547-25121870
Coord C2 exon
chr3:25121871-25121938
Length
2324 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTTTTTTTTTTTCATTGCAGATT
3' ss Score
12.15
Exon sequences
Seq C1 exon
GGGGCGAGAGCGGGGCGGGGGGGCCGCGGGAGCCGCTCCCTCCTCGCCCAGCCCGGCCCGGCAGCGGGAGGAGGGCGCACAGCGCAGACATGGCGGCCAACATGTACCGAGTGGGAG
Seq A exon
GTAGGTGGCGGCGGGGCAGCGTCCGCACGGCGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTAACAGGGAGCCGTGCCCTCCCACCCATCTCTTCAGTCTCCCTTTAAGTGAGTTTGAAGGTGTGCTGACATAACTACAGCTCCCTTATAAGCACACTCCGTCATCTGGGCGTTGAGGCTGTAATCCCATCAGCCTTTACTCATCGCAGTAATCCCCATCCGAACAGTGCTGTTGACATCTTGGTTGGGTTTGTTTCTTAGGTCATTGAGTCCCTGTTTTTTGTTTGTCTGCTTGTTTGGTTTTTGTTTTTATTTTGTTATTGTTGTAATCTTAACGGTGAGTGATAACCAGAGATCTTACTTTTCCTTCAGTGCTGTTTGAGCTACCCGAGGCTCTGCTTGGCTTTACCTCACGTCAAAGCGTTGCAAAAGGTTTTATATGTCCTCATGGTTCCCCTCACTCCCTGTTCTTTTTAAATAAAACTTGTGAGACACATCATGCAAAAGTCAGATACTGAGCGCAGCGTGTGACTCTCATTTGATGGCTACTTTTTCATTTGACGCAAGTTTTGAGAAACCTATAGAAGGAAATGTTTTGTGTGTCAAGTTTTTTGTTTGCATGCTACTTGGGAGTAACTTTTAGGATATGGGCAAATTTCCATATAGTCCGTGAGAATACTCTAATGGTCTAGAAGAGATTTTGGCACAGAAGAAGTTCATGACTTGAGGCTCTATTACTGTTGAATGTAGCTGACGTGTTACTGAGCAGAGATGACAACAAAACCAAGTATCACAAAATGCACGTTACTCATCTGGACAACTGTGTTACTGCAGCATGTGATAATGAATGTGAGGTTACATATGTTACACGGGTAATATTTCTATAATCTAGAAACTCACTAAGGCCTATCTTCTTAAATCTGCCTTAATGACAGAATGGTTGAGGTTGGGAAGGACCTCTGCAGGTCACCTGGAGGTCACTCTAGCTTCAGAAAAGCTTTTGCACAAAAAAAAAAAATTTATTTATAAAAATATATATTTTTAGCTGTATTATTTTTGAAATAATACGATATCTTTCATTTCTTTTTTTTTTTTTCATTGCAG
Seq C2 exon
ATTATGTTTATTTTGAAAATTCCTCCAGCAATCCGTACCTCATTAGGAGAATTGAAGAGCTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925:ENSGALT00000016137:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (disopred):
C1=0.300 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(4.2=60.0)
A:
NA
C2:
PF0142613=BAH=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]