MmuINT0101451 @ mm10
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83706191-83708466:+
Coord C1 exon
chr17:83706191-83706285
Coord A exon
chr17:83706286-83708398
Coord C2 exon
chr17:83708399-83708466
Length
2113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGTGCGTTTTTTGTTTGCAGACT
3' ss Score
10.49
Exon sequences
Seq C1 exon
GCGGTCGAGGCTGAGGCGGCGGCGGCGGGCGGGGCTCGGCTCGGGCTCCGCGGGCGGGCGGGCGGACATGGCGGCCAACATGTACCGGGTCGGAG
Seq A exon
GTAGGAAGGCTCGGCCCTTCCCGGCCCGTCGGGGAGCGGGCGGTGGGAGCGGGGGTCCGGGCAGCGCACGCTTACTGCCAGCAGCCCGGGAGCCCGGGGCTGAGGGCGCCGCGGGCGGGGCGCAGGGGGATCCCCACCCCCACTCCCCTCCCCCACCGCTCCTGCCCGGCGTCTCGGGGCCAGGCCTCTTCTGGGGACACGCATCGGACACCCCCTTTACGAACGCCCCAAAGGGACAGAGCCCCTGCAAGCCCCCTAGCTGAGTGGTCTTTCCCTCGCGTGGCTTTTGGGCACGAGGGAGGGGGGCTTGAGCACCCCTCACCCCAAACCCCGGCTTCTGCCTCGGTGTTAGCGTGGGCTGGGGACGATGGTGGCCCAGGTGGGGGGCAGAGCTCGACAGGCCTGTTTGCAGAGCCCGGGCCCTGCACCGTCGCTGCTTCACCCCCCATTCCCTTCGGTTTCCCGTTCAGTCCCCCTGAGAGTGGGGCTGTGTGTGGGGCCAGGGAGCCGCAGCCCCAGGTAGGGAGTAGAGCTCAGCCTGGACGTTGGCTCTGCTGTCTGTCTTTCCAGCCTTCTGCAGAAGAGAGAGAAATAAGGTCAAACAAACTTTCCCTGCTCACGACGCCCTCCCTCCCTCCTTCCTGGTAAAATAATAATTCAGATAAGTGGCGTGTTTGTGAGTGAGACTTGCTCTTCCGTCTTTGCTCATTAGCCGAGCTCCTGATGGATGATGGTGGGGGAATGGCCTGGCTAAATGAGGCCACTTAGCAGCAGAGGGCTGGGAGAGAGCCGCCTAGGTAGACCGTGACTGTGCAGTCTAGTCTCTCAGGTAAACACATAGTGGGAAGTTTCCAGCCACTCTGTAGAGGAAAAATCCTGTACCTTTGGTTGAAAACTTGCCATGGTTTCTTTATAAGAAGGGTCTAAATGGAGTTGAATCAAATATAAAAAAAGGGGGGAAAAAAAACAACCCAACACCCAGCCCCTATTCCTCACCATCCCAGGTAGAGCAAGGAAAAGTTTGATACCTGCTTGCCCTTACACATTCTGCCTGCCGATTTTTTTTTTTAAGTTGATGTTTGAAATGAATTTGGGCTGTTAAGCCTTTCTTTTTCTCCTGATTTGTCTCAGGTCAACACTTTTATGTAAGAATCGTTGTTGAGGGCTGGTTGGATTGGAGGGATGAGGCGCTAGTGGGAGGCTGCGTTGATGAGCTCTGATACATAGTGATGAAGGGGTTTGCCTATCATGTTGTGGTGGGGTTGTTTGGTTGTTTGAGGCAAGGTGTCTACTTAGGCCTAGATGCCCTAGGATTCAGTCCTAGACCAGGCTGGCCTCACAGAGATCTGCTTGCCTCTGCTCCATAGGTGCTGGGATTTAAGACCTGTGCTTTTTGTTGTTGTTTGAGGCAAAGTCTTGCTATGTAGCACGAGGCTGGCCTCTGCTTTGTGATTCTCCTGCCTTTGTGTCCCACTCCCCCCAATTACAGCAAGCCATGCTTTTTTTTGTTTTTTTTTTTAAATTAAATAATTAATTCAAGGGTGACCACTGTGGCACATGCCAGTAAATTCAGCCTGTAAGTGTTGGGCCAGGAGGCTTAGGAGTTGAAGGCCAGTCTCAATTACTTCACCAGTTCTTGCCAGCCCGGACTGCTATTTTCAAAAAGAAAATGAAATGTAAGCAGGATGTGGTACGTGGTACATACCACTAATCTCCACTTGAGTGTGTGAGGCTGGGGGATGTTGAGTTAGTTCTAGATGAGCTTGGGCTACTTCGTCAGGGGTGGGAATTCTAGGACGGTGATAAACTTGGAACCGCTTACAGAGGCTGCCTTACAGTGGCTTGCCTACTTCCTAACGCATAGGGAATTGTAGCCCAAGAGATGGTGGCTCACCTTTAATCCCAGCTCTCCAGTCCTGGGCAGAGGCAGGCAGGTCTCTGCTGTGAGTTTGAGGCCAGTCTGGTGAACAAGGCAAGCTCTCTGAGACATGCCGAGCTATCTCATGTGACCCTGTCTAAAACAAAACGGAAAATAAACAAAAACAAGAAAAGGGCTCTGAGCTGTCAAATGTGAGCTCTTGGTTGAAAAGACCTGTGCGTTTTTTGTTTGCAG
Seq C2 exon
ACTACGTTTATTTTGAGAATTCCTCCAGCAACCCGTACCTCATCAGACGGATAGAGGAGCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817:ENSMUST00000067826:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (disopred):
C1=0.362 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(4.2=60.0)
A:
NA
C2:
PF0142613=BAH=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types