MmuINT0101451 @ mm9
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:84105503-84107806:+
Coord C1 exon
chr17:84105503-84105625
Coord A exon
chr17:84105626-84107738
Coord C2 exon
chr17:84107739-84107806
Length
2113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGTGCGTTTTTTGTTTGCAGACT
3' ss Score
10.49
Exon sequences
Seq C1 exon
CGAGGCGGCGGCGGCGGCGGCAGCGGCGGCGGTCGAGGCTGAGGCGGCGGCGGCGGGCGGGGCTCGGCTCGGGCTCCGCGGGCGGGCGGGCGGACATGGCGGCCAACATGTACCGGGTCGGAG
Seq A exon
GTAGGAAGGCTCGGCCCTTCCCGGCCCGTCGGGGAGCGGGCGGTGGGAGCGGGGGTCCGGGCAGCGCACGCTTACTGCCAGCAGCCCGGGAGCCCGGGGCTGAGGGCGCCGCGGGCGGGGCGCAGGGGGATCCCCACCCCCACTCCCCTCCCCCACCGCTCCTGCCCGGCGTCTCGGGGCCAGGCCTCTTCTGGGGACACGCATCGGACACCCCCTTTACGAACGCCCCAAAGGGACAGAGCCCCTGCAAGCCCCCTAGCTGAGTGGTCTTTCCCTCGCGTGGCTTTTGGGCACGAGGGAGGGGGGCTTGAGCACCCCTCACCCCAAACCCCGGCTTCTGCCTCGGTGTTAGCGTGGGCTGGGGACGATGGTGGCCCAGGTGGGGGGCAGAGCTCGACAGGCCTGTTTGCAGAGCCCGGGCCCTGCACCGTCGCTGCTTCACCCCCCATTCCCTTCGGTTTCCCGTTCAGTCCCCCTGAGAGTGGGGCTGTGTGTGGGGCCAGGGAGCCGCAGCCCCAGGTAGGGAGTAGAGCTCAGCCTGGACGTTGGCTCTGCTGTCTGTCTTTCCAGCCTTCTGCAGAAGAGAGAGAAATAAGGTCAAACAAACTTTCCCTGCTCACGACGCCCTCCCTCCCTCCTTCCTGGTAAAATAATAATTCAGATAAGTGGCGTGTTTGTGAGTGAGACTTGCTCTTCCGTCTTTGCTCATTAGCCGAGCTCCTGATGGATGATGGTGGGGGAATGGCCTGGCTAAATGAGGCCACTTAGCAGCAGAGGGCTGGGAGAGAGCCGCCTAGGTAGACCGTGACTGTGCAGTCTAGTCTCTCAGGTAAACACATAGTGGGAAGTTTCCAGCCACTCTGTAGAGGAAAAATCCTGTACCTTTGGTTGAAAACTTGCCATGGTTTCTTTATAAGAAGGGTCTAAATGGAGTTGAATCAAATATAAAAAAAGGGGGGAAAAAAAACAACCCAACACCCAGCCCCTATTCCTCACCATCCCAGGTAGAGCAAGGAAAAGTTTGATACCTGCTTGCCCTTACACATTCTGCCTGCCGATTTTTTTTTTTAAGTTGATGTTTGAAATGAATTTGGGCTGTTAAGCCTTTCTTTTTCTCCTGATTTGTCTCAGGTCAACACTTTTATGTAAGAATCGTTGTTGAGGGCTGGTTGGATTGGAGGGATGAGGCGCTAGTGGGAGGCTGCGTTGATGAGCTCTGATACATAGTGATGAAGGGGTTTGCCTATCATGTTGTGGTGGGGTTGTTTGGTTGTTTGAGGCAAGGTGTCTACTTAGGCCTAGATGCCCTAGGATTCAGTCCTAGACCAGGCTGGCCTCACAGAGATCTGCTTGCCTCTGCTCCATAGGTGCTGGGATTTAAGACCTGTGCTTTTTGTTGTTGTTTGAGGCAAAGTCTTGCTATGTAGCACGAGGCTGGCCTCTGCTTTGTGATTCTCCTGCCTTTGTGTCCCACTCCCCCCAATTACAGCAAGCCATGCTTTTTTTTGTTTTTTTTTTTAAATTAAATAATTAATTCAAGGGTGACCACTGTGGCACATGCCAGTAAATTCAGCCTGTAAGTGTTGGGCCAGGAGGCTTAGGAGTTGAAGGCCAGTCTCAATTACTTCACCAGTTCTTGCCAGCCCGGACTGCTATTTTCAAAAAGAAAATGAAATGTAAGCAGGATGTGGTACGTGGTACATACCACTAATCTCCACTTGAGTGTGTGAGGCTGGGGGATGTTGAGTTAGTTCTAGATGAGCTTGGGCTACTTCGTCAGGGGTGGGAATTCTAGGACGGTGATAAACTTGGAACCGCTTACAGAGGCTGCCTTACAGTGGCTTGCCTACTTCCTAACGCATAGGGAATTGTAGCCCAAGAGATGGTGGCTCACCTTTAATCCCAGCTCTCCAGTCCTGGGCAGAGGCAGGCAGGTCTCTGCTGTGAGTTTGAGGCCAGTCTGGTGAACAAGGCAAGCTCTCTGAGACATGCCGAGCTATCTCATGTGACCCTGTCTAAAACAAAACGGAAAATAAACAAAAACAAGAAAAGGGCTCTGAGCTGTCAAATGTGAGCTCTTGGTTGAAAAGACCTGTGCGTTTTTTGTTTGCAG
Seq C2 exon
ACTACGTTTATTTTGAGAATTCCTCCAGCAACCCGTACCTCATCAGACGGATAGAGGAGCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-Mta3:NM_054082:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (disopred):
C1=0.300 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(4.2=60.0)
A:
NA
C2:
PF0142613=BAH=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: