HsaINT0105859 @ hg38
Intron Retention
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr2:42568045-42570504:+
Coord C1 exon
chr2:42568045-42568226
Coord A exon
chr2:42568227-42570436
Coord C2 exon
chr2:42570437-42570504
Length
2210 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TGTACTTCCTTTAATTACAGATT
3' ss Score
8.46
Exon sequences
Seq C1 exon
TGGCGAGGCGGGAAGCACCCGGAATCTTCCTGGCCCTAGAGCCTGCAGGCTCCAGGCCGGCCCCTTGAATCTCACCGCGAGGAAGGCACCCTGCTGCCTGCACTTATTTGCATCCAAGAGTTTGCATTGAGACTGGCGCTTGCCTACTAGGGCAGCCACAGGGGGGTTCCCCAGGGACAGAG
Seq A exon
GTAGGGAAGGAGGACCTGTCTTGGGGTGGACAGGTGACGGGGTACCCTGGGTGGGGGAAGAGGTGCTGGGGAGAGGCTAAGCCCCAGCCCCCACTCTAATTCTCTAACAGCCCCTGGTCCGCATTTGAGTGCAGGCCTCTGCCTCAGCCAGGACCCTGACCCCAGGGCCCTCCACTTCCAGCAAGGCCCCCCACCCTCCCTCCCACTCCCACTCCCTTTCCCCTCCCCCTCCCCCCCAATTCCCGCTGGCCCCGCAGCGCTCCAGCCTCCCCGGGCCTCCCCCGGCCCGGCCCACTCGGCCTTGCTAGCCTGGCGCTGGGGGCGGGCACCAGCCCCCACCCCTCGGCGTACCATCCCCTTTACTTCCCCCACCCCCTGTCCCCTCCCTTCCCTCCCTTCCCCCCCGTGGCGAGGCAGCAGCGACGGCGGCGGCGGCAGCGGCGGTCGCGGCTGAGGCTGAGGAGGAGGCGGCGGCGGCGGGCGGGGCTCGGCTCGGGCTCCGCGGGCGGGCGGGCGGACATGGCGGCCAACATGTACCGGGTCGGAGGTAGGCAGGCTCGGCCCGACCCGGCCCGTGTGGGAGCGGGTTCCGGGAGCGGGGGGCCGGGGCGAGTGCACGCCAACTGCCGGGAGCCAAGGGCGCCGGGGCTGAGGTCGCAGTGGGCTGGGGCGCCGGGGCCCGCAGAGGGGCCGGGACTCCCCACCCCCACCCATCCCTTCCCCTCCCCCCACGCGGGCTCGCGAGGGCCCGGGGCCACCTTCACCCTCGCACCCCGCCCAGTGTTTAGGGCCAGGCCTCTACTTGGGGGTACGAATTACCAGACACCCCCCTCCACGAAACCCTCATCGGGGTAGGGCCCGTCGAGCCCCCTGAGAAGGTGGCCTTCTTGCGTGGCTTCTAGGCGCTGGAGAGGATGAGGGGACATCCCCTCTCCTGCTTCTTCCCCACTCAGTGGGAGCCTGGGGTGGGGGTGGGGGTGGGGGCGGTGGGGGCCCAGCCAGGGGCCCAGCTGGACGGGCCTGTTTGCGTGCCGGGGCCCTGCACCTCCCCTTCCTCGGCCCCCCTCCTTTTCGTTTCTGGTCCAGTCCCCCACGAATGGGGCTTCGTGGGAGCTGGGAACCTCAGCCGGAGGTGGGGAGTTGAGCTCTGCCTGGACGTTTGCTCTGCTGCCTGCCTCCTTCCCAGTCTTCTGCGGAAGAGAGAAATAAGGTCAAACAAACTTTCTCCCTACTCACGACGCCCTCCTCCCTCTTTCCTGGTAAAATAATAATTCAGATAAGTGGCGTGTTTGTATGAGAGACTGGCTCTTCCTTCTCTGCTCATTAGCCGAGCTTCTGATGGATGGTGGTGGGAATGGCCTGGCTAAATGAGGCCACTTTGCAGAAGAGAGCGGCGAAAGAGCCACTAAGATAGACAATAACAATGCAGCTGCCTTTCGGATAAACACACAGTGGGAAGTTTCCAGCAAGCCTATTAGATGAGAGGAAAAGCCACACTTGAAAAATTTTATCCTTTTAGTTGAAAGCCTGCAGCAATTTCTTAATCACAAGACATTAAATGGATCTGGATTAAATATGGTAAAAGGGTAAAAAAGATGCTGATATCACCCCCAGAACACTTTGCCTCTTAGAAGTGATCCCCCGGCCCCCTTTTTTCCTCATCTTCCCAGGTAAAACTGTGGAAAAGTTTGTCAGCGTTCTTCCTCTTAACCTGTTCTGCTCATCTGATTTTTTTTTTTTTTTTTAAGTAGTGATTGAAATGTAGGTTGGACTGTGAAGCCTTTCTCCCTGCTCTGAATGTGTCTTAGGTCAATAGTTTTATGTGAGAAGCAGCCTGCAGGGCAAATTGTATTGGAGGAAAAAGATGTGGAAGTAGTTATAGTACAGAGGACACATGTTTAGCGTGCCCTGACTACACAGTGATAAGAGGTGTCTTTTTTGTTTATTATTAAAGAAATGACGTATTGGGACAGAAGTCTAGGAGAAACTGATAAAACATTAATTGAAATGAAAATGCCAAGAAAATAAAGGTCTGTGAATAGTAGGCACGTGAGAGGATATATTAAGGCTGCATTATTATGTTTGCTTTTACCAGTGAATGAATTATGAGCTTAATTTCAAACGTGAAATGCCTAACATAAAAAGTCTTGGATTGACAAATCTGAACTTTCTGTTAAAAAGATTAAGTTCTGTACTTCCTTTAATTACAG
Seq C2 exon
ATTATGTCTACTTTGAGAATTCCTCCAGCAACCCATACCTAATAAGAAGGATAGAAGAACTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935:ENST00000406652:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0142613=BAH=FE(15.3=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development