GgaINT0083449 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BY32]
Coordinates
chr3:108411089-108411731:+
Coord C1 exon
chr3:108411089-108411251
Coord A exon
chr3:108411252-108411581
Coord C2 exon
chr3:108411582-108411731
Length
330 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GAATCTCCTCTTTGTGTCAGGGA
3' ss Score
5.55
Exon sequences
Seq C1 exon
CTGTCAAAAGAATATGGTCCTGTCTTCAGCGTTCAGATGGGGCAAAGGAAAATAGTAGTGATCTCTGGGTATGAGACAGTGAAGGAAGCTCTCATAAACCAGGCAGATGCCTTTGCAGAGAGACCAAAAATCCCAATCTTTGAAGATCTGACCAGAGGAAATG
Seq A exon
GTGAGTTGCTTTTCTTTTTCCTAATCAAAAACTTTGTTTCCTGCTTAAAAAGCAGAGGGTGTCACATCACTTAGAATCAGAGAAAATATAAGGCACTGCAAACAGGGAGTCATAACCTCACTGACTGCAGTGGATTTATTCAAATTTTGAACCAAAGTTTGTTTTTCTTTCTTTTGTTGAAGTCTGAACAAATTTAGGGAAACATTTATTTCCTTGGTCAGATAGAATTTAACCTGTTTTCAAACCTACTGCTACTGCTGTCTACATCATTTGTCTGCAAACTCGTTACTCTAAATCTGCCACTGCCTTGGAATCTCCTCTTTGTGTCAG
Seq C2 exon
GGATTGTTTTTGCTCACGGTGAAAACTGGAAAGTGATGCGAAGGTTTACTCTCACAACCTTACGAGATTTTGGGATGGGAAAAAGAGCCATTGAGGACCGCATTGTGGAGGAGTATGGCTATCTGATAGACAACGTTGGGTCACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAAGAATATGGTCCTGTCT
R:
TCTTGTGACCCAACGTTGTCT
Band lengths:
310-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]