HsaINT0044237 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:41442002-41442446:+
Coord C1 exon
chr19:41442002-41442164
Coord A exon
chr19:41442165-41442296
Coord C2 exon
chr19:41442297-41442446
Length
132 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ACACCTCCCCTGCACTGCAGGCA
3' ss Score
7.79
Exon sequences
Seq C1 exon
TTCCGAGAGAAATATGGGGACGTCTTCACGGTACACCTGGGACCGAGGCCCGTGGTCATGCTGTGTGGAGTAGAGGCCATACGGGAGGCCCTGGTGGACAACGCTGAGGCCTTCTCTGGCCGGGGAAAAATCGTCATCATGGACCCAGTCTACCAGGGATATG
Seq A exon
GTGAGGGCTTCAGAGGCACTGGGAGGGGGCAGGTGGGGGTGCATCAGGGAAGGGAGTATATGGGGGGAAGAAGGACTCAGAGCCTTCTTCCAACTTCTTCTGCAACCAACTCACACCTCCCCTGCACTGCAG
Seq C2 exon
GCATGCTCTTTGCCAATGGAAACCGCTGGAAGGTGCTTCGGCGATTCTCTGTGACCACCATGAGGGACTTCGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATTCAGGACGAGGCTCAGTGTCTGATAGAGGAACTTCGGAAATCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
-CYP2B7P1:NR_001278:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCACGGTACACCTGGGAC
R:
TGAATCCGCTCCTCCACACTC
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)