GgaINT0085335 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52436401-52441225:+
Coord C1 exon
chr3:52436401-52436463
Coord A exon
chr3:52436464-52441060
Coord C2 exon
chr3:52441061-52441225
Length
4597 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTTTCTCTGGCTTCCAGCAGCAA
3' ss Score
5.94
Exon sequences
Seq C1 exon
ATTTTTGACTCCACTGGAGGACATGGATTTGCCGGTGTCCAGAATTCAGCCAACTCTGCTGAG
Seq A exon
GTAAGAGAAGCCTGTCTCTATTCTGCTCCATCTTATTTTTAAATTCTCAAATATATTTCCTGAATATATAAGTGTGTTATGAGGCTGGTTCAGAAACCCCACCAAGATTCATAGAAGTACAGTCAGTGTTAGATGGCAGAATTATAGTTCTGCTCACTTTCAGTTTTTCAACATGCATGGAAAACATACTTAACAAGTAATGATAATAATAAAAAACCCTAGAAACTTCTTTACAGCACTAGTCCTTACTGGTACACTGTCTGTAAAGTAGTATCTAAGAAACAGATTTTGAACTGAGTTTGTTTGAAAGTTTTGCCTTTGTGTTGTGGCCCATGCTAAGCTTTATTTTTCCCCTTTGTCTAGTTCAACAGAACCTGTTTGTTTTGAGTGTTAAGGCAAATGAAATTTAATTTAAGTCCTGTGGGCAGAGAAGTGAGTTAATGTACATGGCGCAGGACATTGGTCACAATCCCTTTTGGTTCCTGCAGCCTCCCTGGGGATAGCATCACCATCCGCTGGCTGGAAGCAGAGTAGGACACTCTCAAGTCCATAACCATACACACGTAGGCGCACTTCATGCTGTCTAACTACCGTCAAGCTTATACAGACAGATACTTCTTCCCTTGGTAGGCTTGCACAGATAAGCACCAGGTAGAGGATTAAATGTTGGGCGCAGAGTTTTTGGACTTTCTTTTGTGTATGGAATTGCAATATGTGCCAGATGAAAAAAGGGATTGGTCTTCCCACCTACTTTCTACCTCCATTCTTCTTTTGTTCCTGAAACAGATACATTTTTTAATGTAGTTTAAGACTTAGGGAAAGATTTTAAAAGAAAGAAAGAAAGCGTGTCACAGTGCTACTCCTTTTCAGCTGAATAAGTGTACCAGGTCTTAGACAAAAAGTCAAAATCTGCTTTTAGAATAAAATCTTGCTTTTGAAAATGATTAACTATAGTGAAAAGTTATAGTGGATTTCATGGCAAAGTTTTGGACAAAGTTCAAAATCTTTCATACATTTTCCTATTCTTGGATTTTTGCGGTATCATTATGTGTTACGTGGTTTCTTTTCTTATCAAAGGTATTCATGTGATGGCTAGGTAATAAAGAGATGTGTAATTATGCATAAGCTATATTGCTGAGAGGTATCTCTAACTGACAGCAACTGATCTTGTAATGCTGTTTATTTGCCTCTTGAAAGTATCTTCACTTTTTGTGTATCTTTTGAAGCAATGTACTGAAACAACTGAATTCCCTTTGTTACTTGACCTCTTCCCTGTTATTTCCTGGAGTGGGAAAATATTTACACTAAATCACCCCTCTCTTTTCCAAATATATTATCATTATGTGAGATTTCTGGGGGACATGATCTCCTGTAGAGAAAACTCACAAATTCCTCCAAAATGTACCACTGACGGTGGTGTAAGGTTGCCCCAGCTTCACACGTCAGAAATAGCAAAAAAATTCAAGTCCTCTTCGATCTTGGGGAGATTTGGTCCCTCCTAAAACTGGTATGAGGCAAAATCTCTTGGGTGCAACTCATGAAGTTTATTCCCAAAGGGATGAGTTGCTAGTATCTCATTTCTGCCACTGACCCCATTGAGACTGGGAGATCAAGAGCATCGCCTGATGCAGCCAAGTCTGCTGTGGGTTTTGTGTCCCCTGGCATCTCTTACTCTTCTTGAACCGCTCTGAGGAGATACAGACCGGTCTTGGAGGTGGCACAAGACGGGAAGAATGACATCCACTTCCCTTGGTGCTGAGTCTGGAAAGGGTCAAAGTCTTCCTCTGCTCTGTGTGGGCAGGAGCAGCTAGCATATGGTCAATCTTGCTGCAGGTTTTGGACAGGACATTCACAGAGTTACATGAGGCTGTTTCAGGACTCGAAAAGTACTCCAACTTAGGTGTTGAAGTGGAGCTCTGAATCTCAGCTTTATTTCTAGAAAAACATTGCCATCTGAACTGTATCTCAAAAGCCTTTTTTTAATGGGAGTTAAATACAGTGTGGGCATTTTTAAGATCCTGACATTTTCATGAATCACACGACAACTCAGAAATGATTCATCATAGCTCTGAAAACCGTTACTTTGGCATTAGCCCATTTTCACTGGCTAATTTCAATAAAAAACAAAACAGGATAAAAACTTTTATAGAATGCTACCCGAGGAATGCAGTAAATTACAAACAGCAAACTCTGCCTGGAAAGCTATATTTTCCCTGAAAGGGATGATAAAAATGGAGACAAATAGAGGGGGAAATTATGAAGTAACCTATTGATCCTGCAGCAACCCAATGGCAGAACGTGTGACAGTCTGCAAATTCTGGCATATTTTTCTGGAAAATCGGATGGGTTGTTTTAACTTTATGTGGCAATGAATGAATGAACTATTGTAGTATTAGTCACTGCGGGCATAACAAGAAAAAAATTCCTTCATGTCAGATTTTCTGAGATGGAAAATGTGAATGAAGCAACAGTATATTGACTGCAGTTAAGGAACATGTTTTTGTTTAATACCAGAGATGAGTTTGTCTTCTGGCTTATGTATGAGCACCAATGTACATGGCAAGGAAGGGAAGCATCCTATATTGGAAGGAGAACTTTGTCTTGTCATAAATATTTCCCAAAGAAGGTGGCCTTGCTTAAATCTATTTCTCACTACCTTCATCCTCTATTTTTGTTTTGATTGATTTTTTTTTTGTATTTTCTTCTTTCAATCTGTTGCAAAAGCCAGATTTATTCTTGTTGAACAGATACAAAGAGCTATTATTGCAGGATAGTAAACGGTTTTGGTAATTACAAATCGCTGAATTGATGGGAGCGTCTAACTAAGTCAGTGCAGCTCAAAGGAAGCTGCTGGAGAATTCAGTCTTACCATTTCCATCTCGACTCTTGTAGTATGCTTGCCTTGCCCTTTCTCATTCCTGCTATATATGCTGTGGAAGATCATCATTTACTCCCAGGCACTTGATTGACTTGTTTCTGAGAGGATCACAGATCCACTGGAAGTATCTTTTTCAACTACAGCAGTTTTACAAGCAGTCTGGAGCTGCAGCCACTGAAGTAAGACTCCACCTGGTGTAGATTTTGTCGCTCCATTAATTGCAATGGCATAACAGAGCTGCTGTTATGTATAATAGCTGTTCTATTTTAGTAGGATTTCTATGGACCTATGCTAATCAATATTTCATTTTCAACTAGTTATAAAGGACAGTTGAGCAATCAGTATAAGATTCTGGAATGCTCTTGCTGCATTAAAATAATTCTGCCAAAACCAGCACTATGCTTGCATAAAATTATTATTGTGGTTCATCTGCAACCTGAATTTCTGCACTGTTTAATAATTACACGAATAGGACTGTTTATTACATCTTTTTTACAGCCACAGTTCTTATTTAGAAAAACAAAATAATATTGGTCTCTGTTGATGTTGATAGTTTGTTGTCAATAGTTTGTTTGATGCCTGCAGCAAGGGAAGCAGTCCCTGTGCACTGATTTTACTGCAGCTTTTAATTGCAGTAGACCAATGGGCTTGTGTCACTGCAGAGTCAGGAGGAAGAATTGCATAATCAAGAAGCTTTTTGTAGGTGGCAAAAAACACCCCAACCCAAACCAACAGGGACTAAAAACAAACTAACAAAGAAAAAGCAATCAGAAGTTAGGCACTCTAAGACAGCTCAGACTATCTTAAAATCTCTCTTCAGTCACAGTTCTGCTGCTTTCCCAGGTTACTGTCACTTTCCCTTGACTGTAAGTAGGAATCCAGGGAGCACCTCTCTCTGTAAACAAAATGCTTTGATGAGGGCAGTGAAGTGATGTGCTGAATAGGCAGACCCAAATAGAGAAGTGAAACTTCAGGTTTAGAAGTGCTCACAGTGTTTTTCTTCTCCTTGTGTGGCTTCCTTTGAAATGTCTAGCCTGAAGTGCATTGCGGAACAAAGTGTGAAAATGAAGGGTGAGAAAATGACAGGGATTTTAGTTAGGGTGGATGTTGTATTGGATCAAGCTTGAGTGGGTTTGGAATGAGCGTGAATATGAACAAGATTGATAAACAAGCAAATACTCTGCTACCTATGAATTAATGTGATTTCAAGCAGAAAATAGAGCAGCGCTTTATTCCTGCTTCAGTCCTTTAATATGTTATGGCAAGCCTTGCTCTACAGTGCTCTCTGCTGGAAGTATCCTATACTATCATTTTTTTTTCTGTCAAAATTACTGTAATTATGTTTTTTTCAGATTTGTTAATTAGGTAAAACTGTAGTAGTCAACTCTTCTTAAGAAATGTTTCCCACTGTGGTATATCAGGTAGTTACATATTTTCAGTTAGGGTTAAATCAACAAATAAAATGAGAAAAAGGCATAAAAGCCCATAATGGGAATTCAGTGGAAGTACATTCCATTATCAAGAAAATCAACTCATTGGCAGCGAATGCGAATCAGTAACAGAACTTTGTCCCTTATTTGCCATGGGAGCATACATAGCACAGTGTCTAAAGATATGGTGGTACATATGCACTGCAAACTGCCAATGTAAGTGTACATTTTTTAGTATTAATTTTGCAACATTCACATATGATTTGCATTTTTCTCTGGCTTCCAGCAG
Seq C2 exon
CAAGTTGATGAATTTTTGAATGTCTACTGCTCAGTACCGGACAGCATCCAGAAGGAGAATGCTTGGGAAACACAAACGTATGTTCACTTCTGTGACGGTCAAGGAGTAGCTTTAACTCTGAAACCAGACCACAGGGTGGAAGATGTTCTGTCTCTGGCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0219610=RBD=PU(56.6=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]