GgaINT0087289 @ galGal3
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30710053-30710467:-
Coord C1 exon
chr3:30710270-30710467
Coord A exon
chr3:30710130-30710269
Coord C2 exon
chr3:30710053-30710129
Length
140 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTAAATTATGTGTCTCTTAGGTA
3' ss Score
8.4
Exon sequences
Seq C1 exon
ATTACAGAGATGATAAATGTAGTACAAACCTTTCGTGCACTGAGTATGTCTACCATTGAAGGTATAGATATTATGGCAATAAAGTTCAAAAATATCTATCAAAGTGTTCAAAAGAAACAATACGACATCCTTGATCCAAGAAAAACAGAATTTGATGTGGATTTTGTGGACTTCATGGCAAAAATTGAAGGTTTAGAG
Seq A exon
GTAAGCAGTATTGCAATTTATAACTTAATTGGTGGAGGATCTCATCACTACTGACTGAATAGTACTACATTAAGTAATTATCAGACATCAGAATATTACAGTATGACTGGAAAAACTCTATTAAATTATGTGTCTCTTAG
Seq C2 exon
GTACAGATACAAACATTTATGCGAACTTGTTTTGGAAGAATTTTGTCTTCACAACACGCACTCCAGTTACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000016453:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCTTTCGTGCACTGAGT
R:
ACTGGAGTGCGTGTTGTGAAG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]