HsaINT0049955 @ hg38
Intron Retention
Gene
ENSG00000124721 | DNAH8
Description
dynein axonemal heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr6:38775754-38778464:+
Coord C1 exon
chr6:38775754-38775951
Coord A exon
chr6:38775952-38778387
Coord C2 exon
chr6:38778388-38778464
Length
2436 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATATTAATATTTTATTTTAGGTA
3' ss Score
10.41
Exon sequences
Seq C1 exon
ATTACAGAAATGATAACTGTTGTGCAAACATATTCAACCTTGAGTAATTCTACCATAGAAGGAATAGATATTATGGCAATAAAATTCAGAAATATATACCAAGGGGTTAAGAAAAAGCAATATGACATTCTGGATCCAAGAAGGACAGAATTTGACACAGATTTCTTAGATTTCATGACAAAAATCAATGGTTTAGAG
Seq A exon
GTAAGTAATTATACCTACTTTTACTTAGTAAAGCTGAAAAGTAGTCAGTAGTACTATCTGGTACTTTTTGTAAATATTCACATGTAGTAAGTGTTTCTATATTTATGATTTAAGTTCCTCTTTCACATTGACCAAACATATTTGCAGTGTGAGTAACTTTTAAACTACTCCACTAAAGGATTTTTTTTTGAATGAATAGTGAGCATATCCAATAAAAGACATCAGAGAGTAACTAGAAGCCCAAAGGGCTTTTATAGCTAGGATTCTTTTTTTTTTTTTTTTGTGAGATGGAGTCTCACTCCATTGCCCGGGCTAGAGTGCAGTGGAGCGATCTTGGTTCACTGCAACCTCCACCTCCCGAGTTCAAGTGATTCTCCTGCCCCAGCCTCCCAAGTAACTGGGATTACAGGTGTGTGCCACCACGCCTGGTTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATTCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACTGCACCCAGCCTCATTTTTAATATACATTAAAATTTGTATTTGCTTCTTGTGCCTAGGAGCACAAGAGAGCATTTGTAAACATTATTCTTTATCAAGTGTGATGAGATTTGAGAACAGATTAGGAAGATGGATCACTCTTCCTGTGGCCTTATGCTTTATGCCTGCATTCTCTCTGCAGCTATAGAGGGCAGCTCTGAAGAGGCATTCATATCCTGTGTGTCATAGATTAAGAGACACCAGATGGATGAAGGGTAGTCAGAAAGTATGTCAGATGAGACTGTAAGATGTTTTTCTCTCACCTTTTGGGCTATATGACCTCAGTTACTCTCTACTGTTAACTGAAACTACTGTTAACCTACGTTTAGCCCAAGGGAATGGTTTCCTCTTGCTGCAGAATTTCCTGGAGACACAAGCAGGGAGAAGAATATACTTTGTACACTTTTTAAGTCTGATATCCTTGCCATGAAAGTGAGAAAAATCAGATGTTTTTCTCAAGTATTTAAAAAATTCTTTAAAAACTACATTACACGTAACCTGGGCAATATAAATACATAAGAAAGATCCTAAAATTCTACCATTCTAACGATAACACTTTTTGTGTTTTGGCATAGATTTCCTTTCAGTTTTTGAAACTTAGACTCTTTGATATGAAGATATATTATATTTTAATTATTACTTTTAGTGTTTGGCTGGTTAGGTAGGGTGGAGTTTACTTCCAAAATGCTTCGAAAGTTAAATCTTTATGGCAATGGGAATTTTTGAAAAACTTGTTATCTCTTAAATTATTTTTATGATTTATTAAGAAAGATTATATGTTATAAAGGCTTTATTGTGGACTTAGATTCAAATTTTAGCTTTCAGTAAATTACAGCAATATTAACCTTTTAATAGTTAAATAATTTACTTGAGGCATCAGTGTTTTAATTTTAATTTTTCTTCGTTTTCCAATGTTTGATTTATGGGTGTGGTATATATTAATAGACCATACCAATATGATCTATACATACAAATAATTTGCAAAGAATGGTTCAGTTCCATCTTTTGGGTACCGGGAGTTTGGAGTTCACTGTTAGGGATGGTGGGAATATTTATTTATTTTTATTTTTATAGAGACGGGTTCTTGCTATGTTGCCCAAGCTGGTCTTGAACTGCTGTCCTCAAGCTATCCTCCCATCTCCCCCCACAAAAGGCTGAGATTACAGGCATGAGCCACCACTCTGGGCCAATGGTGGGACTCTTGAAAGAACATTTTCTACTTCTTGTACGTCCTTAGCAGTGGCAAAGAGGTTTCTGAGAGCAGCAATGTCAGAAAATGACATCTGCTGGCCCTGGTGTCTATAGCGTCACTACACTACTCTACCTGAAGTTCTATATATCCCAAAGAAAAATGCTTGTAAGGGACCTTCACTCCTTTTGTAAATTCTCTAGATCAGAAATATCCAATTGGTAATGACCTGCAAAGGCAAACCACATGTCACTTTAATTTTTCTAGTAGCCATTGAATAAAAGTAAAAAGAAGCAGGTGAAATTAATTTTAATAAAGACTCTATTCAACCCAATATGTTAAATATTTTAATGTCATTAATATGAAATCTTTAATGAGATATATTGCATTCTCTTTTTTGTACTAAGTCTTTGAAATCTGGCATGTATTTTACATTTATAGACATCTTGCTTCTAAGTAGTGACATTTCAAGTGCTCAGTAGCCACATGTGGCCAAAGTCCATCATACTGGACGATGCAGTTCTTGATGCTTAGATGGTAGATGTGTTTGAGGCTTGAGGCTATCTTAATTCTGTAGGAAAAGCATTAACTGTTGTTAAACAAAACCAATCTCTTTAACACCAAAAATCATTTAAATATTAATATTTTATTTTAG
Seq C2 exon
GTACAAATACAGGCATTTATGAACAGTAGTTTTGGGAAAATCTTATCTTCTCAGCAGGCTCTTCAGCTACTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721:ENST00000359357:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development