RnoINT0049156 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9345318-9350336:+
Coord C1 exon
chr20:9345318-9345518
Coord A exon
chr20:9345519-9350259
Coord C2 exon
chr20:9350260-9350336
Length
4741 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATGTTGATGTTCTGTTTTAGATT
3' ss Score
10.93
Exon sequences
Seq C1 exon
AAGATCACGGAGATGATAACCATCGTGCAAACATACTCGGCCTTGAGCAACTCTACGATCGAAGGGATCGATATTTTGGGGATCAAGTTTAAAAACATTTACCAGGGGATCAAGAAGAACCAATATGACATCCTGGACCCGCGAAGAACAGAATTTGACACAGACTTCTCAGATTTTATGGGGAAAATCAACACGTTAGAG
Seq A exon
GTGAGTAGGTACACAAACTCTCGTATTCATAAAAAAAAAAAAAAAAAAAAGCATGGTTGGTGGTTCCGCTTGGTACTGTTATTAAAATGTCCACACAGAGCGATGCTCCTGAATTAATCACTTTTAAAAGGTTTTTATTTCAGTTTGTTTTTCTGTCCACATGCATGCCTGCATACCATATGTATGCCTGGTTCCTCAGAAGCCAGAGGAGGGTGTCAGATGCCCTGGACTGCAGTTACAGTTGTGAGCCACCGTGTGGTTGCTGGGAATGGAGCCTAGGTCCTCTGCAAGAGCAGCCATCTTGGGGTTGGGGATTTAGCTCAGAGGTAGAGCGCTTGCCTAGAAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAAAAGGAAAAAAAAAGAGCGGCCATCTCTCCATCCACATGGGTTTAGTATTTATTTTATTCCTGTTCGAAGTTGCTTTAAGAAATCTGTAGGGTGAATAATTTTTTTAAAGCAATTTATAAAACATTTTCCACCTGTATGTGTGCCTACATGCACATGGATGTGTATGGTCGTGTGTCCAGTCGTGTGAATGTGTGTGGGGGATTTATGTGCAAGGTGGGAAGTCCAGGGGACAACCTCGGGTGTCTTCTACCTTTTATACGAGCTAGCGCCCGACATTGGCCTGAAACTTCACCATAAACTTCCAGTGATCCACCTATCTCTGTGATCCTGATTCATTGTGAGGATTTTAGGCACTCACTACCATTTTTTCTTTTCTTTTCTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGCGCCTTGCGCGTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGTAGGGGCCCTTTTCATGCAAACCATCACGGGATCTGAACTTAAGTCTTCATGCCTGCAACCCATGTGCTTTACGGACCATATCATTTTTCTGGCCTCTCAACTTTTTATTTTAATTTTTAGTGAAAACTGAGTATATCCAGTAAAATACATGCATGAATAACCATACATCCAAGGTCTTTTATACACTGTTGTATTAAATATTAACACTATTCGTGTTGCCCTGCTGGTGGTGGCGGCGGCCTGAGGTCCTTGCCCTGCCCAAATGCTTGGGATTCTTGAGTGAAAGTCACACACACACACACACACACACACACACACACACACACAGAGAGCCTTATTTTTAATATGCCCTAAGCAGCCCAACAGCTGGGCCAGTCCCAGACTTCCACATTGCTAAAGCCTCCCTTCCGATATTCCTAAATTATTACTAAAAATCTATATTCCATCTTTGTTATTCCAGACCTAAGCGGGGAACGGGGTCTTGGGGCCGCTCTTTCCTGCCTCTTACATGACTGGATGCTTCCTTTTTGCAGCTCTCAAGCCTGATCCTTCCACTTCCCCGGGATGGGGGTTCTAAATCCATTTTCTTCTCTGGGTTCCCTTCCCTGGGAAATCTAAAGTCCTACCTCGATTTCCCTGCCCAGCCATTGGCTGCTGGCAACTTTATTTACCAATCAGAACCAGATGGGGGCGGGGAGCCGCAGTGTCTTACAGGCAGATGTGTGAATTCCCATGCGATCTGAGAACAAAATGAAAACAATATAAGCAATAAACCAAACGCATAATATCTTACCCCTTTTCATCCATTAAAAAGGCCTTTACTCTCAGATAACACAGTAAATATAGTGATAACAGTTATGTAAACTATAAGGTCCGATATACACTGATAGCATCCCGACTGTCAACTTTGACAGTTTAGGTACACTTCTTTAACATTTATCCTAACTTAAGGCGTTTACATTTTTACATATGAATTGTGTCTGATTTTCACTTGTGTTACCATCTGAAAACCATTCTTTCTCATCATCTTCCTTAACGCTGAACAACTTAATTTTGCTTATGGGGCTATAACTAGTCTTTAACCCCATCAGGGATCCGAGAAGGGATTCAATATTACCTGGATATATAGGAAGCACAAAAACATAGCTTAAATTGTAGAGACAGTTGACTACCTGGACTACCCATGTTCCTCAAAATGTTGGAGCATCTGTCTTTCGCCTTCTGGCCCAGAACCATCTGACAGATCTTAGGTGAAGTAGGAGTTATGAAGGAGTCGCCCACCCTGTCTTGGCAGAGCTAAGCTGTGGACCCTTTTGTATCGCGTGTCCTTTCTTGGACAGTATATTTTAATGAAAAATGAGTACATCCAGTAAAAGATATGCATGAATAACCCGCATATCCAGAGGTTTTTTTTATACATTGGTATAAAGTGCCTTTCCCCAGAGGGCTTTCCCACTAGCCTTCTTTTTTCCAGCTTTTGAAACTCTTGTTTCTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCTTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTGAAACTCTTGTTTCTTGACATGAAGACTGAAGGGAAACCAAGACTTACGTACAATCTGTTGCTTTTAAAACCTTTTAAATGTCTATTACTGTAATCGTGGCAATATTAATAAGACTGCTCCTGAAGTGTCACCACTCCTACGGTCTGCCTTTGGAATAGGTTTCCTTTCAATTAAAATAAAAAAACCAAAACTTTTTTATTTTTCTTTTACGTATGTGTTCGCCTGTTTGTATGTGTTCGCCTGTTTGTATGTATGCGCACCTCACGCATGCAGTTCCACCAGAGTCCAGAAGAGGGCACCACATCTCCCTGGAACTGGAGTTAATAGACGGTTGTAAGCTGTAATGGAAGGTGTTAGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAGGTGTTAGAAACTGAACACAGGTCATCTATAAGAGCAGCCAGTGCTCTTGACTATTGAATCATCTCTTAAGTTTGATCCTTTGTCTGTCTGCCTGTCTGTCTGTCTCATTGTTCTTGTTGTTGCTGTTGTTGTATGTGTATTACTAGGTCCCACCTCTGCTAGACAAGTACTTTTAGAACGGAACTATATCCCCCACCCTTTTCTTACTTTTCATGTTGACATGGGGGTTCTTATTAAGTTGCTTAGGCTGGCCTTGAACTCCCTCTATGGGTGAAACCTGTCCTTGAACCAGTGATCTTTCTACATCAGCCTCCAGAGTAACTGAGATCATAGGCCCACGTCATCAGGCCTGATAAGTTAACTTATCTTTCATTTCCCCTTCCACTTTTGGAAAATTATGGTCTGATATCAAGACATATTCCCATTATTACTGTTCATTTTGACTAGTTGTGCTGGATGGAGTTTACTCCCGAAATACATTGCAAATTAAATATTCATGGCAACAGGAATTAAAAATTTTGCTCTCTGGAAACTTTATGATTTATTAATGAAGATTATATATTATGAAAGATGTAAATTTTAGCTTCCAATAAAGCTAGTAGCCATACGATTTTCTTTTCATTTTTCTCTTCTGTGTTTTGAGGACTGCTGATTGGTTCCAACTAGTTTGGCACTGTACCACTGAGTTACATCCCCGCCCTTCAGTTTTTGAGAGACATAGCACAGGCTGGCCTCAGACTTTTTAGTTTTCCTGCTTCTGTCTCCTGAGTGCTGGGATTATAGGTGTGTGCTGTCAAACCCAGACCATACAATCCCTTAGATAGTTATTACTAGATAATTTGACTGTGCTGTCGGAATTCTGAATTGCCTTCCATTTCCAGTTGACAAACCGGTGGGTGTGACCCATTCAATCACCAATACCAATAGAGTCCACATGGAAAAAAGAATCAGCAAAGAGTGATTTCAGTTCCACCTTTCAGGGCCAAGGGCTTGAAACTCATTGCCAGGGATGGCGGGAGTCTGGGGAGGAACATTTTCTGTCTCCTGTTCCTACTGAGCCCCAGCACCAGGTTTCCCAGGGCATGGGCAGCTCACATCTTTGTTTGTAAATAAGCTGTCCTAGAGACAGGCTTAGAAATTAGCATCCCCGGGCTAGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATCGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCACCAATGTACTCATATACATAAAATAAATACATTTAAAAAAAAAGAAATTAGCATCCCAAAGAACACTTAGCAAGGGACCCTTTCCCGTCCCCTCATTCTCTCACTTGGAATATCCAACCAGGAGCTGCAAATACAAACCATCCAAGAGACTCCCAGTCTTTCTAGCAGCTGCCTGAATAAACCAAAAAGAAGCTGAAATTCATTTTGATACTGTACTGTGTTTAGTCCGGTCTATTGGTAATATTATGATTTTCACATGCTATTAATTGCTAAGCCATGAAGGAAGTGTTCTATGTAACCTCCATGGGTATGTAGGCAGCTGGTGCGAAGCCGTTAAGATGTCGTGTGTGTTTTCTACTCACCTTCGTCTCACTTCTAAGGGGGCGATGCCTCATTCAGTAGCCGATGTGGCTTGTGGCTGCCACAGCAGACTAGGCCACGAACATCACTCGGCACTTGGGTGGTAGATATGTTTGGGTCTTTAGGGATGTCATAACTGTGATACAAAGACCCCTTCACGTAAACGTAACTGGAATGTTGATGTTCTGTTTTAG
Seq C2 exon
ATTCAAATACAGGCATTTATGAACATTACCTTTGGAAAGATCTTGTCCTCCCAGCAGGCGCTTCAGCTGCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.8=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]