MmuINT0051114 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30800243-30805295:+
Coord C1 exon
chr17:30800243-30800440
Coord A exon
chr17:30800441-30805218
Coord C2 exon
chr17:30805219-30805295
Length
4778 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ATGTTAATGTTCTATTTTAGATT
3' ss Score
10.87
Exon sequences
Seq C1 exon
ATTACAGAGATGATAACCATTGTGCAGACATACTCAGCCTTGAGCAACTCTACAATCGAAGGAATCGATATCCTGGGGATAAAGTTCAAAAACATCTACCAGGGCATTAAGAAGAACCAATATGACATCCTGGATCCACGGAGAACAGAATTTGACACAGACTTCACAGAGTTTATGGGGAAAATCAATATTTTAGAG
Seq A exon
GTCAGTAGCTACACAAACATGCATGCATCTAGATGGGAGCATCGCGGATAGTTTTTCTTGGCGCTGCTATTGCAAAAATCCATGCAGAGTGATGCTTCTATATTGATCTTTCTAAAATAAGTTTTTATTTCATTTTGTTCGTTTTTTTCTCTGCATGTATGTGTGTGTACCACGTGTGTATACCTGGTTCCTCAGAAGCCAGAAGAGGGTGTCAGATGTCCTGGAACTAGAGTTACAGTTGTGAGCCACCACGTGGGTGCTGGGAATGGAACGTAGGTCCTCTGCAGGAGAAGCCAGGGCTCTTAACTGCTGAACCATCTCTCCAGCCACATGTATATACCATTTATTTTATTCCTGTTCCAAGTTGCTTTAAGAAATTTGTAGGGTTAATACTTTTTTAAAGCAACTTATAAAACATTTTCTACCTTTGTGTGTGTGTGTGTGTGCACACGTGTGCACATGGATGTGTGTTTAGTTGTGTGTGGGGGGGGTATTTATGTGCAAGGTGGCAAGGCCAGGGGACAATCTCAGGTGTCTTCTACCTTTTATCTGATTTAACGCCTGTCATTGGCCTGGAACTTAATCACAAATTTCCAGTGATCGATCTTGTGTCATTGCTGAAATTGTAGCCACAAACTACCTTTTTTTTTCTTTTTATGATGATTCTGGGGACCTGTTTTAGTTCAATTGCTGTGAAGAGACACCATGGCCACAGCTACTCCTTTAAAAGAAAACATTTAACTGGGGGCTAGGCTACAGGTTCAGAGGTTTAGTTCATTATCATCATGGTGGGAAGCATGGCAGTATCCAGGCAGGCATGGTGCTGGAGAGGAGCTGAGAGTTCGACAAGATCCACAGGCAGCAAGAAGAGACCCTGACACTGGGCCTGGCTTGAGCTTCTAAAACCTCAGTGTCCATCCTCAGTGATATACTTCCTCCAACAAGTCCAGGCCTACTCCAACAAGCCCACACCTACTCAAACAAGACTACATCTACTTGAATAAGGCCACACCCCTCAAACAAGACCACACCTACTACAACCAGGTCAGTTCTCCACTCATATCATTCCCTATGAGTCTGTAGGGGCCCTTTTCATGCCAACGATGGGATCTGAACTCATGTCTTCATGCTTGCAACCTATGTGCTTTATTGACCTTTTTTCTGGCCTCTAATCTTTTTTTTTTTTTTTTTTTTTTTAATGAAAAAAAGATCCAGTAAAAGGCATGCATGAATAAGCACACGTCCAGAGCTGTTTTATACATTGTTGTATTAAATATTAACGCTATTCATATTCATGTTGCCCCACGGCCACCTGGCAACGTACTCTAGCTGGGTCACTCCCAGACATGCGCATTGCTAATGCCTCCCCTCCTATACTCCTGAATTAGTACTTACTGACATCTATATTCTACCTTTGTTGCTCCAGACCAGCCGGGGGAGGGGTCCCTGGGCCTCTCTTCCCCGACTCCTCCATGGCTGTATGCTTTTTCTCCTGCAGCTCTCAAGCCTGATCCTCCTGCTTCCCCAGCATGGCGATTCTCCTTCTTCCCTGGGTTCCCTTGCCAGAAAGTCTAAAGTCCCGCCTCTGTCTCCTTGCCCTATCATTGGCCGCTGGCAACTTTATTTACCAATTAGAGCCAGATGGAGGCAGGGACCCAAGGTGTCTTACATGCAGACATGCGAATTCCCATGTGATTTGAGAGCTTAATTAACACAAGTAATAAACCAGATTCATAACATTTTACCCTTTTTTTAAAGATTTATTTATTATTATATGTAAGTATACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGCATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCACATTTTACCCTTTTTAATCCATTTAAAAATGGCCTATTCTCTCAGATATACATTGAACATAGTAATAGCAGTTGTGTAAACTGTAAGGTATGATATGTACTAATAACATCCAGTCTATCAATTTTGTCAACTTAGGCACATCACTTTAACATTTATCCTAACTTAAAAAGTTTACAATTTTATATCTGAATTATCTTTTAATTTTAACTTGTATGACCATCTGAAAACCATCCTTTTAGATCATCTTCCAGTTTAATGCTAAACAACTTAAGTTTGCTTATGAGACTATGACGAGTCTTTAACCCCGTCAGGGATATGAAAATAAATTAAATATTACCTGAATATATAGGAAGCACAAAAACATAGCTTCCAAAAGTTAAATAAATTGTAGAGACACCTCCCCCCCCCCTTTCAAACTGTAGGAGTGCTTGTCTTTTGCCTTCTGGCCCAGAACCATCTAACAGACCTTAAGTGAAGCAGGATTATTATGAAGGACTAGCTTTCTCTGTATTAGCAGAGCTAAGCTGTTGACTCTTTCGTATCATGTGTCTTTCTTGGACAGTATACTTAATGAAAAATGAGTACCCAGTAGAAGACATGCATGAATAACCATACACCCAAAGGGTCTTTATACATGGGTGTAAAGTGCCTTTGCCTGCTGAGCTTTCCCACTGGTCTGCTTTTCCCAATTTTTGGAACTCTGTTTCTTGCCATGAAGAATGAAGGAAAAAATAAGACATGTGTAATTATTGCTTTTAAAGTCTTTAAGGTGTATATTACATGTAATCTTGGCAATACCAATAAGCCAGCACCACAAAGGTACCTCCATTCCTGCAACCATACTGTCTGCCTTTGGAACAGCTTTCCTTCAATTTAAAAAATATATATACTTATTTTTCTTTTATGTATATGTTTGTCTGTGTGTGTGTGTGTATGTGCACATCATGAATGCAGTTCCAGCAGAGGCCAGAAGAGGGCACTGTATCCCCTGGAACTGGAGTTAACAGAAGGTTGTGAGCTGCCTTGTAGGTGCTAGAAATTGAACCCAGGTCCTCTGTAAGAGCAGCCAGTGCTCTTGACTGTTGAATCATCTCTTAAGTTTTAGCCTTTGCCTGTCTTTTGGACTGTTTGTTTTTCTAAATCATTGTTTTGTCGTTGCTGTTGTTTTGTGTGTGTTACTAGGTCCCACATGTGCTAGGCAAGTACTCTTAGCACTGAACTGCATTCCTCATCCTTTCCTTACTTTTCATTTTGACATGGGGTCTCATCAAGTTGCCTAGGCTGGCCTTGAACTCCCTCTATGGACAAGACAGTCTTTAAACTAGTGATCTTTCTACATTAGCCTACAGAGCAACTGAGATCACAGGCCCACATCATCAGGTCTGAGAAGTTAACTTACTTTTCATTTCCCTTCCACTTTTGAAAATTATGTTCTGATATCAAGATATATTCCCGTTATTACTGTTCATTTTGGGTAGTTGGGCTAGATGGAAATTACTCCCGAAATAAATTGGGAATTAAATATTCATGGCAACAAGAATTAAAAATTTTGTTCTCTGAAAACTTTATGATTTATTAATGATGATTATATATTATGAAAGAAGTAAATTTTAGCTTCCAATAAAGTTAGTGGCCATACAATTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTCTTTTCTTTCTTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTACCGGTGATTGGTTCCAACTAGGCAGGCAGTGTGCCACTGAGTTACATCCCAGCTCTTCAGTTTTTTGAGAGACAGGGTCTCTGTACAAAGCACAGGCTGACCTCAGATTTTTCTAGTTTTCCTGCCTCTATCTCCTGAGTGCTAGGGTTATAGGTGTGTCCTGTCAAACCCAGCTCCTATAAGCCCTTTGATAGCTATTGCTGGATAACTTGACTGTGCTGTCAGTATTTTGACTTTCCTTCTTTTTCCAGTGTCTGACTAACCCGTGGTTGTGATCCATTGGACCACCAATACCGATACAGTCCATGTGGTAAAAAGAATCAGCAAAGAGCAATTTCAGTTCTATATTTCAGGGCCAAGAGCTTGAAGCTCATTGCCAGGGATGGTCGGAATCTTGGGAGGAAAATTTTCTGTCTCCCGTTCCTACTGAGCCCCAGCAACAAGATTTCCCAGGGCAGTAGAGTGGGCAGCTCATATCTTCTGTTTGTAATGTCAATACACTGTCCCAGCAACACGGTTAGAAATTAGCAACCCAAAGAAGAGCACTTAGCAAGGGACCCTTTCCTCTTCCATTCATTCTCTCAATTAGAACATCCAATCAGGAGCTGCTCGTGCAAACCACCCATGGGACTCGTGCCTTCCTAACAGCTGCATGAATGGATGAAAAAGAAGCTGAAATTCATTTTGAAATTATACAGTTTTTAGTCCAGTCTATTCAGAATATTATAATTTTCACACGTTATTAACTTCTAGGCCACGAAAGAAGTATTTTATAGAACCTCCGTGGGTTTGTAGGTGGGGAGGGGGCGGGTATGACGTTGTTAAGGTGTTGTGTGTATTTTATGCTCACCTATGTCTCACTTCTAAGGGGGTGGTGCTTCCTTCAGCAGCCACATGGCTTGTGGCCACCACAGCAGACTAGGCCACAGGCATCACTAGGCGCTCAGGTGGTACATATGAAACAAAACTAGACTCCTTCACGAAAACACAACTTGAATGTTAATGTTCTATTTTAG
Seq C2 exon
ATTCAAATCCAGGCGTTTATGAACAGCACCTTTGGAAAGATCTTGTCCTCCCAGCAGGCTCTGCAGCTGCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.6=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: