GgaINT0088319 @ galGal3
Intron Retention
Gene
ENSGALG00000016330 | ANGPT2
Description
NA
Coordinates
chr3:91442103-91442830:+
Coord C1 exon
chr3:91442103-91442204
Coord A exon
chr3:91442205-91442663
Coord C2 exon
chr3:91442664-91442830
Length
459 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TTTCATGTGTTGAATTACAGGGA
3' ss Score
7.26
Exon sequences
Seq C1 exon
GCCTACTGTGACATGGAAAGTAATGGAGGAGGTTGGACAGTTCTTCAGAGACGTGAAGATGGCAGCGTGGATTTTCACCGGACATGGAAAGAGTACAAGATA
Seq A exon
GTAAGTAATGTTTTTGGAGGCATTAATATTGGATATTATATTCTGAAATTTGCTATGATAAAGTAATACACATAGCATCCTCAGAATGTAGGCAGGTTTTGAAAGTTGTCTTTATCCATAGATGTTCATTTTGAAAGGGTCAGAGTAGTAAGTCTGCTTTGACAAACAATTTATACAAATGTGATGTTTGTTTTTAAAGAGAAACTTCATTTTTCTTTCATCAACTATTCTATGATATGTCCATATTTTTGAGTTACTTATATTTGTGTTTCCACTGGCAACTTGCCCCAAGTCTATTATTTCAGATAAAGATCTGTAACCTTCACAGATCCAGTAAAACTATGTGTTAGCTGACTGAAAACCACTGAAGTTAAAAACTGATCAAGGGATCTCTTCAAACTCAAAGGGAAAAAACAAGTTGTATCTTTAAGTGACTATGTTTCATGTGTTGAATTACAG
Seq C2 exon
GGATTTGGTGATCCTGCTGGGGAGTACTGGCTAGGAAATGAGTTTGTTTCTCAACTGACTAATCAGAAGCGCTACGTTCTTAAAATAATCCTGAAAGACTGGGAAGGAAATGAAGCGTACACTTTGTATGACCAATTCTATCTAGCAAACGAAGAACAAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330:ENSGALT00000026341:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTGTGACATGGAAAGT
R:
TGTATTTTTGTTCTTCGTTTGCTAGA
Band lengths:
268-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]