HsaINT0007980 @ hg19
Intron Retention
Gene
ENSG00000091879 | ANGPT2
Description
angiopoietin 2 [Source:HGNC Symbol;Acc:485]
Coordinates
chr8:6371199-6372299:-
Coord C1 exon
chr8:6372198-6372299
Coord A exon
chr8:6371366-6372197
Coord C2 exon
chr8:6371199-6371365
Length
832 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TTTAACAACTTGCATTACAGGGA
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCCTACTGTGACATGGAAGCTGGAGGAGGCGGGTGGACAATTATTCAGCGACGTGAGGATGGCAGCGTTGATTTTCAGAGGACTTGGAAAGAATATAAAGTG
Seq A exon
GTAAGGACATTCTTTAAGGCATCAGAAAAGAATTTCCCTTGTGAAAAATAGCTTTCAAGATCTGCGGAACCTTAACCACCAATCCCAAACTAACCAATGACTTTTGACATGGTTTTTAAAATTGGTGCTTCAGTCTCCCCTTTAAAGAATGGCCAATATAAGGTAAACTGTATCAAAACAAAAGCTGCAGCCAGACGTGCTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGATGGATTACCTGAGGTCAGGAGTTTGAGACCAGTTGGCCAACATAACAAAACTCTGTATCTACTAAAAATACAAATATTAGCCAGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGGTGCAGTCAGCCAAGATCACACCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTCAAATAAACAAGGCTGCCACTACTTAGCTTATTTTTAAAGGTGGACTCAGCATTTTTTTGGTAAGCCGACTGTTTAATGGTGCTTCACATTCCCATGAACTGAGCTGTTTATGCCAAGGCTTCTGCTGGTGGCTCCCCAAGTAGTTCTCATTATCCTAATACAAGTTTTCTTCCAGCAGCAGCTTAGTGTCTAATAACTGACCTATTTAAAATCCATTTTCCTTTGGGAAGGACCCTAAATTGTCACAGCACCAGAAGGAATTTCTGCTATTTGATAGTTATTCTATGTTAAGTTGACGGACTATCCACTTCAAATATACAAAGAAAAAATTACATGAAATAATTGAATTTAACAACTTGCATTACAG
Seq C2 exon
GGATTTGGTAACCCTTCAGGAGAATATTGGCTGGGAAATGAGTTTGTTTCGCAACTGACTAATCAGCAACGCTATGTGCTTAAAATACACCTTAAAGACTGGGAAGGGAATGAGGCTTACTCATTGTATGAACATTTCTATCTCTCAAGTGAAGAACTCAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091879-ANGPT2:NM_001147:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTGTGACATGGAAGCT
R:
TGAGTTCTTCACTTGAGAGATAGAA
Band lengths:
262-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)