HsaINT0007980 @ hg38
Intron Retention
Gene
ENSG00000091879 | ANGPT2
Description
angiopoietin 2 [Source:HGNC Symbol;Acc:HGNC:485]
Coordinates
chr8:6513678-6514778:-
Coord C1 exon
chr8:6514677-6514778
Coord A exon
chr8:6513845-6514676
Coord C2 exon
chr8:6513678-6513844
Length
832 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TTTAACAACTTGCATTACAGGGA
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCCTACTGTGACATGGAAGCTGGAGGAGGCGGGTGGACAATTATTCAGCGACGTGAGGATGGCAGCGTTGATTTTCAGAGGACTTGGAAAGAATATAAAGTG
Seq A exon
GTAAGGACATTCTTTAAGGCATCAGAAAAGAATTTCCCTTGTGAAAAATAGCTTTCAAGATCTGCGGAACCTTAACCACCAATCCCAAACTAACCAATGACTTTTGACATGGTTTTTAAAATTGGTGCTTCAGTCTCCCCTTTAAAGAATGGCCAATATAAGGTAAACTGTATCAAAACAAAAGCTGCAGCCAGACGTGCTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGATGGATTACCTGAGGTCAGGAGTTTGAGACCAGTTGGCCAACATAACAAAACTCTGTATCTACTAAAAATACAAATATTAGCCAGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGGTGCAGTCAGCCAAGATCACACCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTCAAATAAACAAGGCTGCCACTACTTAGCTTATTTTTAAAGGTGGACTCAGCATTTTTTTGGTAAGCCGACTGTTTAATGGTGCTTCACATTCCCATGAACTGAGCTGTTTATGCCAAGGCTTCTGCTGGTGGCTCCCCAAGTAGTTCTCATTATCCTAATACAAGTTTTCTTCCAGCAGCAGCTTAGTGTCTAATAACTGACCTATTTAAAATCCATTTTCCTTTGGGAAGGACCCTAAATTGTCACAGCACCAGAAGGAATTTCTGCTATTTGATAGTTATTCTATGTTAAGTTGACGGACTATCCACTTCAAATATACAAAGAAAAAATTACATGAAATAATTGAATTTAACAACTTGCATTACAG
Seq C2 exon
GGATTTGGTAACCCTTCAGGAGAATATTGGCTGGGAAATGAGTTTGTTTCGCAACTGACTAATCAGCAACGCTATGTGCTTAAAATACACCTTAAAGACTGGGAAGGGAATGAGGCTTACTCATTGTATGAACATTTCTATCTCTCAAGTGAAGAACTCAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091879:ENST00000325203:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTGTGACATGGAAGCT
R:
TGAGTTCTTCACTTGAGAGATAGAA
Band lengths:
262-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development