RnoINT0017302 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:76009122-76010290:+
Coord C1 exon
chr16:76009122-76009223
Coord A exon
chr16:76009224-76010123
Coord C2 exon
chr16:76010124-76010290
Length
900 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGTGCTGCTCTCGGTCACAGGGC
3' ss Score
9.67
Exon sequences
Seq C1 exon
GCCTACTGTGACATGGACATGGGTGGAGGAGGGTGGACGGTCATCCAACACCGGGAAGATGGCAGCGTTGACTTCCAGAGAACGTGGAAAGAGTACAAAGAG
Seq A exon
GTAAGGAAGTGTGCTAAGAAAGTACTTTCCCTTGGGAACTTTAATTCTTTTCAGAACTTTTAATTAACACACATTCAGAAGTGACCAATGGCTTCTGAAGAAGTTATTCATGATATAATTCTTTGTGCCCAGCATCTCTATCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCAAGAACCACTGCAGTTGAAGAAACTGGAATGTAATACAGAGCACGCCGGGCAAGCTGCTGGGCTGTGAGGCTTCCACAGCATAAATGTCCCTAGGACAGTCACGTTTCATGGTACTAGATCGGTCCAGCTCTTCCCCCCACTGCATCTCTGTTCATGGCTATGGCAGTGGCTTTAGCTATGTAACAGTTACATTTCTCTGAGAAGAGCTCAGGTCACTAAAATTGACTTAAATCCATTTCCTGAGCTGTCGAGATGACTCGTGTATGAAATGCTTGCTGTGCAAGAGTGGGGACCTGAGTTTGAATCCCCAGAACCCATTCAGGGCTGAGCACATTGGCTCTCATCTGTAATCCTACAATAAGGTGAGACAAGGACAAGTGACTTTTCAGACCCCTGTGGACCAGCTGGCCTCAGAGTCCTGTAGTGGTGAAAGGGAAACCTGCCTCAAATGAGGCAGAGGGTAGAGCTGACACCTCGGTGCTGGTGACGTCCATAGCCGCACAGTGGCATGTATTTACACCCCCTCTTCTCTCTCAAAAACTAAATGAAAACATCTTTCCTGTGTGTGAGGCCTTGCATTTGTACCGAGCAGGGCAATGGAGTACCATCTGCTGACTGCATGATAAGGGAGGGGTTTCGAACACAAGGACAAACGGGGGACTAACTGTGCTGCTCTCGGTCACAG
Seq C2 exon
GGCTTCGGGAGCCCTCTGGGAGAGTATTGGCTGGGCAACGAGTTTGTCTCCCAGCTGACCAGTGGGCATCGCTACGTGCTGAAGATCCAGCTGAAGGACTGGGAAGGCAGCGAGGCACACTCTCTGTATGAGCACTTCTACCTGTCCGGCGAGGAGTCCAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACATGGACATGGGTGG
R:
CTGTAGTTGGACTCCTCGCCG
Band lengths:
264-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]