GgaINT0009538 @ galGal3
Intron Retention
Description
NA
Coordinates
chr20:9863330-9863545:+
Coord C1 exon
chr20:9863330-9863431
Coord A exon
chr20:9863432-9863502
Coord C2 exon
chr20:9863503-9863545
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CCCTCCCTCGGCTCCCCCAGGGC
3' ss Score
9.25
Exon sequences
Seq C1 exon
GCGTTCTGCGACATGGAGACAGACGGCGGCGGCTGGACGGTCATCCAGCTCCGCACCAACGGCAGCGTCAGCTTCCAGCGGGGCTGGAGGGAGTACAAGCAG
Seq A exon
GTCTGCATAGGGGTGGGGATGGGGCGTTCCTGCACCCACCACCCACGCCCACCCTCCCTCGGCTCCCCCAG
Seq C2 exon
GGCTTTGGGGACGCGGCGGGGGAGCACTGGCTGGGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023639:ENSGALT00000039387:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(31.4=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTGCGACATGGAGACAG
R:
CTTCATTGCCCAGCCAGTGC
Band lengths:
144-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]