BtaINT0017845 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60764835-60766569:+
Coord C1 exon
chr13:60764835-60764936
Coord A exon
chr13:60764937-60766402
Coord C2 exon
chr13:60766403-60766569
Length
1466 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CGCATTCTCCCCTTCCCTAGGGC
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGGCCAGTGGAGGTGGGTGGACCCTCATTCAGCGCCGTGAGAATGGTAGCGTGAATTTCCAACGGAACTGGAAGGATTACAAACAG
Seq A exon
GTAACATTGCTGCCCTGGGGAGGATCTTGTCAGTCCTGAAACCTGGGGCAGGATGTGGGGTGTGGGCAGGCATCTGGTTTGCCCTCAACCCTTCTCAGAAAAAAAAATCAGCCTGCCTAAACCAACTCCCTTCAAACAGGTTTGGCCAGCGCACATTCACTGTCAAGGACTCCAACACCCAAAATTGAACCTTCTTTTTGCAAGTCCTGACGTATATCCTAAAAATGAAAGTTTAGCTTTCATTTTATTTTAATTTTTGGAAAAGATACACGTTGATGGAAAAATTTTACCAAAAAATGGAACAGAAAAAAGTAACCTCTGCTGCCCACCCCGGGATGCACTGCTTAAATGAATGTCTTTGTCTTAACACACATACATGACTACATCTGTAGGAGAGATTTTTTAATGCAGAATTGCTGGCTCAAAGACCCCATGCATTTTACAAGATGAGGGATAATGCCTGATTGTCTTCCAATTTTTTAATTAAATTTTGAGTAAAGGATTTTTGGCAAGCTGACTTAAAAGCTCTTAAAGTTTTTAAGAGCAAAAGAAATAGAAAAAGATACTCAAACGGAAATATAACAATACTATTTTTTGTGTGTCTGTTTGCTGTCCATTTGATAAATACTTGAAAATAAATAGCAAATTAAGCTATGACTGTTCTTAAACCAATTGGGTTTTAAAGAATTATTCAAATGGCAAAAAGAAAGAGGGTGCTCAAAAGCAGAAATACACAAGAGTGCTGACTATAAACCATTAGGCTGATCAGTGGTACTAAAATGGGGAGTGGGGCTTAGGTGTGCCCTGTCCTTAGTGCTGAATTACTGTCCTGGCTAAGGGTGTTGGATACTTGTCACCCTGGGACACTTTCCACCTCAGTGCTCTTCGTTTTACATTTTTGTTACTGAAATTTTGCAGTGGCTGCCATGTCACTGAACAAAGTTTGCTCAGCCATGTATGCAGCGGATTTAAGTTTTTAGCTAGTTTTTAACTGAGATTTAATATACGTGCATTTCTGTGCCCAAATCCTAAGTGTAAGTAAGATTCAGTGACCTTTCAGTGAATATGTATTCACCCATGTGACCACCATTCAAAGATAGATATGCAACATTCCCAGCACCCCAGAAAACCTCCTTGTGTCTCCTCCAAGTCAAGACACCCCCAAAGTAGTGGTTATTCTGACTTCTACCACCACAGACTTTTTTTGACCTGTTCTTTAACTTCGTAGAAATGTGATTTCAATTGCTTTTAAAAGGTTTTTACATTTACAAAAGTCTTAGTCATTTTACTCTAGAAGTTGGGGAGATCCACCCTTAGGCCTGCCCACACTGTTCTTTATGAACTTGGTCATTTAGCAAAGTGGCTTTGGGTGAATGTCCCCAGAGCCCGGCCCAGCCCAGATCCTTAACCAAAGGCGTAGCCTCTGTCCTCCACATGCAACCCACCCGCATTCTCCCCTTCCCTAG
Seq C2 exon
GGCTTTGGCAACCCAGCCGGAGAGCACTGGCTAGGCAATGAAGTGGTGCACCAGCTCACCAGCAGGGCAACCTACTCTCTGCGAGTGGAGCTGCAAGATTGGGAAGGCAACGAGGCCTACGCCCAGTATGAGCACTTCCAGCTGGGCAGCGAGGCGCAGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811:ENSBTAT00000029073:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGTGACATGGAGGCCAG
R:
CTGTACAGCTGCGCCTCG
Band lengths:
267-1733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development