MmuINT0015013 @ mm10
Intron Retention
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151936667-151939071:+
Coord C1 exon
chr2:151936667-151936768
Coord A exon
chr2:151936769-151938904
Coord C2 exon
chr2:151938905-151939071
Length
2136 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CTTTCCTCTCCTCCCCACAGGGT
3' ss Score
14.14
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCACCGGGAGGATGGAAGCGTAAATTTCCAGAGGACCTGGGAAGAATACAAAGAG
Seq A exon
GTAATGTTCTGTCCAGAGGGCTCCTAGCCCAGAGCCTCTGCAGGCAGGTGCTGGGGTGGAGACTGGAAATCCCTAGCTCTAACCCAGGGAAAGCAGAGCTCACCTAAAGCCAACTGCCCAGGCTCACTTGCTTTTCCAGACCTGGCCTCAAACTGAGCCCCCTTTGACATTCCTCATGTGTCCTAAGAATGAAATTTGATATTTGTTTTAATATTTGAAAAATTAACACATGCATGTTGATTTTTTTAAAAAGAATCCAAAGGAGTGACTGGGCAGGTATCTCAGTAGATGAAGTGCTTGCTCTGTGAACACGAGAACCTAAGTATGATCCCCAGAACCCACATAAGAAGGCTGAGAAGGGTGGCATGTATCTGTGGTTCCAGATCTGGGGAGGCAAAGAGGGACACACAGATCCCTGGAGCTCAAAGACTAACCAGCCTAGGTGAATTCTAAGCTCCAGGCTAGTGAGAGAGCCTATCTCAGAAGCAAAAGTGTCACAACTGAGTCACACCTGGCACTGACCTCTGGACTGCGCGCGCGCACACACACACACACACACACACACACACACACACACACAATGCAAAGAATAGAGCAAAAAAAAAAATACCTCATCATCCCTGACTATATGGTTCAAAATAATTTCTTCATTGTTTTTTGGTGGTTTTTGTTTGTTCAAGACAGGGTCCATCTATATAGCACTGGCTGTCCCATGTAGACAAGTGTGGTCTAAAACTCACAGAGATCCACCTTCCTCTGCCTCTGGAGTGCTGGCATGAGCCACCAGGCTCTTCAAATTTCCTCATCTTTCTATACATTTGAAACATGTCTGCAAGACAAATTTCTCTGCCTCATCTTCTGGATTTCATGTACTCAAACACTCTTTGTAGCAGAAGATGACCTTCAACTTCTGATCCTCCTGCCTCCGCCTTCACAATGCTGAGATTATGGGGCTATACCATCACACTTGGTTTAAGACAGATTCTTGAAAGTGGGACTGCTCCAGAGAACACACGGATGGAAAGGAGTGCCCAGCTGCCTTCCAATGTTGTTTTCTGTTAAATTTTGAATTTAGGAATTGTGGCAAGCTGACTTAAAAGCCCTTAAAGCTTTCAAAGTAAGAGAAATAGAAAGAGATTCACAAGAAATCAGTGTCCATCAACTGTCCACTAGATAAGAACTTCACAGTGGCTAGCATTAAGCAGCCAGATCAAGTGGACACTGTGTGCCCCTGTCCTTGGTCCTGAGAGCTTGCTCTGCCAAAGGGCATTGGTTTCTTGCCACCTTGGAGCTTGGGTTACAAAGACACTGTGAGGACTGGTAGCCTTACATCTCTCCATTGCTGAAACTGTTTGGCCTCCGTCCCGCCTCTAGGAAACTGTTCTCTGCCTCTCCTGCCTGGCAGCTGGCTCAGCTGTTTCCTTCCTGCTGGGGCTTAACATGCATGTAGCAGAGCACACAACTATAAAGCAAAGAGCTCCGTGAATCTCCCCACAGGCTCCTCCATGTGCCTGCCATTCACAGCTCAATACTCAGCTTTCCAGCAGCTGGGAGGTCCCCCTGTGCCCCATCTCCCTAGGTGTGTCCCCAAAGGCAGTGGCTATTTCTTTTTATTATCTGTGTGAGTTTAGCCATGCAGTGTGTGTATGCACACATATGTTCATGCTTGCATTCATGGTGGGAGGCCAGGGGAGGGCGTTGTGTCCTGCTCTATCTTTCTTCGCCTTACTACCTTGAGTCGAGCCAGGTTGGTGGCCAGCAAGCCCCAATGAGTCTCCTCTCTGCTTTGGACGTGGGTTTTGGAGATTCTGACTCCGCCCTCATTCCTGCACAGCAATTGCTCTTCCCCACTGAGCTATTCCAATTTCTATCACCACAAATGAGTTTTTGAGTGTTTCTGACTTTAGAGGAATGTAATTTCAGTTATTTTTAGTGGGCTTAAATTTCACAAACACCTTCTCTTTGTTCTCTAGAGGGGAGCTCCTGTCCCAGGCCTGTGCACACTGTTCTTATAAACTTGTTCATTAGCACTGACCTTGGCTAAGTGGCCATGGAGCCTTGGCTGGCCCAGCTCCTCAGCCACAGACACCGCCTCCCTCTTCAGCACACAGCCACCCTTTCCTCTCCTCCCCACAG
Seq C2 exon
GGTTTTGGTAATGTGGCCAGAGAGCACTGGCTGGGCAATGAGGCTGTGCACCGCCTCACCAGCAGAACGGCCTACTTGCTACGCGTGGAACTGCATGACTGGGAAGGCCGCCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460:ENSMUST00000028955:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types