HsaINT0007988 @ hg38
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:878161-879848:-
Coord C1 exon
chr20:879747-879848
Coord A exon
chr20:878328-879746
Coord C2 exon
chr20:878161-878327
Length
1419 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
CCACGCTCCCCTCCCTATAGGGC
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTGTTCTGTGACCTGCAGAGCAGTGGAGGCAGGTGGACCCTCATCCAGCGCCGTGAGAATGGCACCGTGAATTTTCAGCGGAACTGGAAGGATTACAAACAG
Seq A exon
GTAGCCCTGCTGCCTTGGGGAGGGGCCATTCTGCTCTGAAACCTGGGGCTGGGGCTGGGCTGTTGGAAGGGGACTGCTTTGCCCTCATTCCTCCCCCAGAAAAAATCAACTCATCTAAAGCTGACAGTGCACATCTGCTTTATGGGACCCCATCACCTGAATTTGAATGTTCTTTCTGAAAGTTCTGACATATGTTCTAAGAAAAAAAGTTTAGCTTTATTTTTGTTTTAATTTTTTTTAAAAAAATACATATACATTTCTAATTTTTTAAAGAATACAAAGGAGGAGACAGAATAAAAATCCCCCCAGTCAACCCTGACTGCGTTGCTTTAATGAAGTTTCTTGTCTTTTCATACGTCTATGATCATATCTGCAGGAGAGATTCATTAACGAGGAATTGCAGGCCCAAAGATCACATGTATTTTATCAGATGAGAAGCCCGATTGTTTTCCAATTTTTTAATTAGGTTTTGAATAAAGGATTTTTTGCCAAGCTGACTTAAAATACTTAAAAGCTCTTAAAGTTTTCAAAGCCAAAGAAATAGAAAAAGATACCCACAAAGTGATACAGCAGTTCTATTATTTGCGTCTGCTTGCTGTTCATTTAAGGAATACTTAAAAATAAATACCAAATTAAGTTATGAGTGTTTTGAACTAATTGGGCTTTAAACAACCATTAAAATGGCAAGGAGGAATAGGGTGTCCAGGTGCAGAAATACACAAAAGAACCCTGAATATTAACCATCAGGCTAACCCGCATTGCATCGTGACTAAATTGGGGAGCGGGCCTTGGGTGTGCCCCTGTCCTTGGTGCTGAATTCTTGTTCTGTCCAAGGGCATTGGGACATGACATTCCCCACACTCTCAGTTTTACATTTCTGTGTTGCTGAAATCTTGCAGTGGCTGCGCTGTCACTGAACAAAGTTTGCTCTACTATTTATGTAGCTGATTGAAATATTTTATTTAATTTTTGTTGAGGTTTAACGTACATGTGTCTAAGCGCACAAATAAAGTGTAAGGCTCAGTGAGCCTTTAGATATGTATTTAACCACGTGACCACCATTCAGTGCTAGATGTACAACACTCCCAGCACCCCAGAAGCCCACTTTGTGCCCCCTCCCAGTCAATACTCCACCAAAGGTAGTCACCAAATATTACTTTTTCCTGTTCTTGAACTTCAGAGGAATGTGATTTCAATAACTTTTAACAGGCTTTTACACTTACAAAAGCCTTAGTCTTTTCCCTCTAGCAGGTGGAGGGCTCCTACTCCCAGTCCTGCCTACACTGTACTTATGAACTCGATCATTAAGCACAGTGGTTTTGTATAAGTAGCCCTGGAGCCTGGCCCAGCCCAGCTCCTCAGCCAGGGACATGGCCTCCTCCTCAGCATGAGTCTCACCCCACGCTCCCCTCCCTATAG
Seq C2 exon
GGCTTCGGAGACCCAGCTGGGGAGCACTGGCTGGGCAATGAAGTGGTGCACCAGCTCACCAGAAGGGCAGCCTACTCTCTGCGTGTGGAGCTGCAAGACTGGGAAGGCCACGAGGCCTATGCCCAGTACGAACATTTCCACCTGGGCAGTGAGAACCAGCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280:ENST00000381922:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTGTGACCTGCAGAGC
R:
ATAGCTGGTTCTCACTGCCCA
Band lengths:
265-1684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development