GgaINT0091024 @ galGal3
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1838803-1843711:+
Coord C1 exon
chr2:1838803-1838877
Coord A exon
chr2:1838878-1843603
Coord C2 exon
chr2:1843604-1843711
Length
4726 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TGTGTTTAAACTTCTTGCAGGTG
3' ss Score
10.22
Exon sequences
Seq C1 exon
TTGGTCGAATTATGTTTCAGCTCTTCTCAGACATATGTCCAAAGACTTGCAAAAACTTCCTTTGCTTGTGCTCGG
Seq A exon
GTAAGTAGCATGCTTTTATTTAACAACTTTAATGTTTCTTACAACTGCTTCTTTAAATGGGAATAAATTGTAGCTAATAGGTTTTGTTTGGTTGCTTTTTTTCCTGATAAGGACAAAGCTGAGACTTGATGGTGCCCGGAAGGATTTAGTAGCACTGGGAGTAGCCTGGAGTTCTGTAATGGTTACTGAGTTAGAGCAGTGGAGCAGCTACAGAATTCCAGACTGCAAGGTTGTCACTTGGTAGAACAAAACGTTATCATCTATTCCTCATTTGGGCTTCGTTAGAGGAAATTGATACAACTGAAACAATGGAGAAATTATTGACCACCCAAGTTACACACAGGGGGAAGATGAGCAGGACTTGATCAGGAGAGACATCAGGTGTTAATGTCACTGCTCAGTGCAGTGGTGACACTTCACTCGGCTCCATGTGAAGTTTTGATTACTGTTATAGAATAAAAGTATGTTTTGGGTACATGTCAGTACAACAGGGATCAAAGGAAGGAATCTGTTAAACCTTAGGAGAAAACTGCTTTCAGCAAAGTGAAGGATGGAGAGGGAACATTGTTACTTAGAAGTCCTGGGGTTGTGTGGTGGGAGAAAGGAGGGCAAGGATCTCTGAAATCAAAGACAGCACTAGCAAAAGAATTTCTGGGTAGAATCCAGCACCCTATGACCCATTTCTTTTTCTTCTTTTAAGCAGGAATTAACTTCTTCATGAGACTTCTAATGACCGGAATAGTAAGGGTAGTGACAACTCAGTGGCTTTTGGATCCATGGGGCTCCTTGGTGGTTTTGCAACTGCAAGTTAGAATTCAGTCTGGATTACATTATTGCAGGAATCTCTGTGTTACTTATACAAAGAATTCATTCCATGCATCTTGGTCCTCTTGTCCTGCATACCTGAATTCTCAAGTAGTATGCCTTAAATTAACTGCACCAACTAAGGCTCTTTTAGAGCTAGCCAGTAGGCTGGCTGGTGTAGTGTCTGAGCCTCATGTTCTGTAGCTCTTGTTTTAATTCCTTTCAGTGCCCCTGCTAGGTTAAAGTTAGCTGGAGATCATGAGGTGTGAAACAGACATGTACTTAGCAGGAAAAAGATCCATAAAAAGAGTTGACAGCTTTGTTTTGCATACCTGTTTAAACTCTACTCTACAGCTGACTGTTCATGTTTCATTGAAGTTTCCAGCTAGAATCTGTCTTTAGTTGGGAGAACACAGAGAGAGCCCAAAGTCTTGAGTTTTGTCTACTCTTGAGATCAGATTCACAGTCATAAAAGCTACCACAAACACTGGTTTCATTCTTGCAGTTTGTTTGCTACTGTGTACTCACAGGCCAGAGCCATGATTTCATAGGTATCTTTTAAAAATTGCTGGTAAATATGTGATAACTAAATTATGAGAGAGATGCACATCAGAGAGCTTCCACTTCATATTTTGGAGTAAGCACTGGTTTTTTTTTTTTGTCTTGCACCTAGAAGCCATCTCTGCCACTGTAACTCTCCAGATTGAATTTGGGATTGCTGAGATTAGAGACTCAGGTTGCATGGCTAACATGTTCTTGTTTGTACCAAGTACATCTGTGCTGCTGTTTAGCTTGCTTGAGTTGCTTCCTAGGAACTGTTGCCTGCCTTTCTACTTCTCCATGACAGGTTCTTCCAGTGCATCTGTTACTGCCAATTTATCTGCATCATGCAGATTTTCCCTGCTCTATTGCACACCTTCATACAGGCATCTATGAAGAAAATTTACTCTGCCAAGGTTTTGGCTGGAACAATAACCACACCTTATTCCATACCACTTACTTCATGCTCAGGTCACGTGCTCTTTAATACATCTTCATTAATCACCTCCCTTTGATTAATATACAGATTTTGTTCCACTAGTGTATGGACTGCCCCTGTGAAATCTCTGTAAAACATCATTGATGTCTCAGTCCGTGACTCAGTACCTATCTGTTGTGGTTGGTGCTTGGGACAGGAATGACCTGGAGTTAATGGATGGCAGAGCCACTTCAGGTTGGGGCACTGCTCCCTGTGAGGCTCATCCTTTGTTGGCTCGAGTGATTCCTACTATTGGACTTGCTGTAACATGCAAATCAAGTCAAGGGTTGCAGCAGTTTAAAGTTGCATCCATTGTAGTCTCCACCTTCTTGCCTTTTGGTCCAGGCCACAGGGCTTTATGGGGCAGTGAACTCCTCCCCTCACTCCTGCTCCAGACTGGGATTGCCCATTGGTCGTGGTCCCTCCAGACACCTGCTGGGTCTGCTTTATCCACGGTCACAGGTGCCTCGAGGTATTCTGACATGGTCTTGTCAATGGTCACAGATGCTGCAAGGTGTACTTGCTCCTGTGTGGACTCATCCACAGGTCGCAGTCCCTCTGACTTGAGTTCTCTCTGGAGTTCCAGCTGCTGCCATTCAGTACGGTGCCCAGGAATGGCAGTGAGGTGCTGTTTGCCAGCCCAAGCTCATGGCCACTGCTGTTATCAGAATGTTCCCAGGCACAGCCAAGCAGGATCGTATGGAGTAGAGCAAACAGCAAAAGAAAAAGCAGCTGCTAATGAGCAATGGACTGTAAGGCAAGCAAGCCTTGTGACAAGCATGGGAGCATACCAATTAGCAACTGAACAGCTATAGCATCAATAAATTTAGTTTAGCACTCCGCTTCCCGATGATGACAGATTTGATTGTTCGTGCCTTGTGGTGGGTGTCAGAAGAACTGTGGCTTAACTCTGCAGGCAACTCAGCATCACACAGGTGGTCACTCACTGTCCCCTAGGTCGTATGGCGGAAAGAACTGGGAATGTAGGAGTGTGGGAACTCAGTGGCTGATAACAAGATTGTTTGCTGATAAAGCCAAAGCCATGTGCACAAACAGCAAAACAAGCCTGCTCCAGGCTTTCCTTCAGCAGGCAAATGTTCAGCCACTTCAGGAGAGCAGGGCTCGTTATGCAAAATCGTTTATTATAGAATCATAGAATTGTGTGGGTTGAAAAGGATCATAATGCCCTTCTAGTTTCAACCCCCCTGCTGTGTGCATGGTCGCCAACCACCCGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAACCTCCTTGGGCAGCCTGTTCCAGTGCGTCACCACCCTCTGGGTGAAAAACTTCCTCCTAATATCCAACCTAAACCTCCCCTGTCTCAGTTTAAAACCAGTCTGCCTTGTCCTATTACTATCCACCCTCGTAAACAGCCGTTTCCCCTCCTGTTTATACGCTCCCTTCAAGTACTGGAAGGGCACGGTGAGGTCTCCCTGCAGCCTTTCCCAAGCTAAACAAGCCCAGTTCCCTCAACTGGGAAACTTTCTCTCATAGGAAAGGTGTTCCAGCCCTCTGATCATCCTAGTGCCCCTCCTGGACCCATTCCAAGAACTCCACATCTTTCCTGTGCTGAAGGTTATTGGGAAGACAGACAAATGCCATCACTCCCAATGCCTCACCATCGTGCCAGTCTTTACACAGAAAACTCTCCCTCTCAACTAAAACTGTGACATTACATGTATTGCCTCAGCATCCTAATTGTGCGCTCTCTCCCAAGGATGTTGTCTGCTGCATAGAGCCACAGATGAGAACCATGGCCAGAAGCAGTAGGCCAGGCTTAGGTATATTCCTACTGTTCGCAGCAGGATCCAGCAATGCTCTGGCACATGCTTTCTCCCTGCCGCCAGGGATGGATATAGCATTCCAGTTGTGCTGCTGCATTTGCCTAGGTTACGCTAGAGGATCTGCTAAGCAGCAGTTCTGTGGTGGGAGATGAAGGTGCACTGATGAGATTGCATGGACTTCTGGCAACCAGGACTGACTTGTGAAGGGCTGCTTTACGTTTTTGGAGTTTGAAGCTGCTAACACCATCTTCAGCAACTGAATAAGTCACTTCCAGGAGTCACCTCCACTTTTCACAGTGAAATTTATTGATGGAAGTCTCGTGTTGTTGTCAGGCGTACTTCTATCCTTATCTTTGGTCTTGACAAGAAATCTTTGAATCATTGGAGACCTAACCAGTACAGCATCGTTTCCTGGTGTTGACATCCTGTCCTAGTTGTATACAGGGGCTACTTTATTGGAGAATGTACAAAACTTGTTTCAGGGCAAGGTGTTGTGCCCTAAGACTAGATCCCAGTGTTTCAAAAGCTGTCTCTCTGGCCGTGCCCCTGCTGCTCCCTCTGTAATCTCTGTCAGAAACAAGTGGAGGAGGATAGGGTGATTCTGGCTGATGTCCTGCAGGCTGTCATTGTTGTCAGACGCAGACTTGGCTACTGTGAAAGAATGCTGTCTGCCTTGACAGCAGAATTCTTGCATTTAAATAAAAGCATCTGGACTTGCAAACTGGCATTTGCATGTCTTTCAGTCAGTCCATCTGCCAGGTAAGCATAAGGCCATTTGCTTTTTGGAGCTTTGTCAGGAGCTCCCCTTCCTATAATCTCAACAGGAGACTGCTTTTGGGCACCTTATGCTAAATATCTGAGATTAGGTTGGCAGTGCAGAATGTTAATAGGGCCTGGGACTGAACTTTACCTACCAGGCTGCTGTTCAGGGGACATGAGAAGGCAACAGGCAGGAATGTGTTTGCTTTTATGGTTAAGGAGGTCTAGCACTGGAGGGGTATGATCCTTGAATTTATTCAGTGACAATCTGCTGATTGTTTGTGTTTAAACTTCTTGCAG
Seq C2 exon
GTGAAAAAGGAATTGGCAAAACAACTGGGAAGAAGTTGTGCTACAAAGGCACTACGTTCCATCGCGTGGTTAAAAACTTCATGATTCAGGGTGGGGACTTCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(26.6=100),PF132061=VSG_B=PU(19.7=46.2)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=FE(59.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]