RnoINT0101349 @ rn6
Intron Retention
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130366775-130368077:+
Coord C1 exon
chr8:130366775-130367341
Coord A exon
chr8:130367342-130367969
Coord C2 exon
chr8:130367970-130368077
Length
628 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTTTTTTTTTCCCCCAGGGG
3' ss Score
12.42
Exon sequences
Seq C1 exon
ACGAGATCTGATGCACTCTTTGTGTCTGAAGACAGTGACAGTGTACTCACATATATAAAATGAGAAGATAAAATCTTAAAAAAAAAAAAGTTCAAAAGAGAGCATGGGAGAGCTTTTCTTCTAACTGCTAATCAGAAAAGACTCTTGAGATGTGTTTATCTCTGACAGCGCTACAGGTCACACAACTGCTATTAAGACACTTGGAGTTGGGAGATCTATAGAGTATTTGCTGTGCATACATAAGACGTTCTGGGCCTAGCGAAATCAAACATTATCTTAAAGGTCATTAATTCTGTATTAAGGGGATCTATGAAACCCAAACACTTCAGATCCTACAGTTTTTGTGGAGAGCCATGAGTTGTTGGGGTTGATATCCAGTATTGTTTTTAAAAATGAAGGAAAACTTACTATTATTAGGTTCTCCTAGTTCTATATATGAAAATTTATTATCAACTTGCTCACTGTTTTTTCCCCCTCATATTTCATTTCAGTTGGTCGAATTATGTTCAGCTCTTCTCAGACATATGTCCCAAAAACATGCAAAAACTTCCTGTGCCTGTGGCTCAG
Seq A exon
GTGAGTAGTTTTTAACCCTGTCTCCCAATGAGAATGCCTGACTACTTGCAGCTTATCTACTTAAAAGGCAGGAGACCCTTCAGAAATATACAGTGGTCTGAGTTATACAACTAAACTTGAATGTGATATGAAATATGAAATGCAGGAAACACTTTGTAAGAGGACAGGAGGAAAAAACATCTTTTAAAATGATAAGGATCAACTTCATATAATGCAATCTTTATATATTTAGTTTGTCAAATAAGACATTTTTAAATTGCTTTTCATTATCATTGCATACACCTATGCCAAGAAGAATAAAACAGTGTTAAACATTAAAAATAGCAAATTTAATTTTTAAAACCTATGTTTGAAAGGATTTTCTTAATTTCATTCTTTAGTGAAGTAATGGTCTCCATTCCTTATTTCCTGTAGCACATAGAATTGTTTCTGGATCAGTTTAGAACATACACTGCTTTGCACTATTTATTGTGATTTGTGCATTATATATGCTACATACATTGTGTCATCTGTGCCTTACATCGCTCATCAGATCAGCACATGGGAGGGATTTGACCCCAGATTAGTTGGTTGGTTATTCTTGTGGAATGATGGGTTTGTAGCTAAACTTCTTTTTTTTTTCCCCCAG
Seq C2 exon
GGGAGAAAGGCCTGGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACATTCCACCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128:ENSRNOT00000071152:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PU(16.6=44.1)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTGGGCCTAGCGAAATC
R:
CAGTTGTTTTCCCCAGGCCTT
Band lengths:
349-977
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]