GgaINT0091084 @ galGal4
Intron Retention
Gene
ENSGALG00000011241 | RFTN1
Description
raftlin [Source:RefSeq peptide;Acc:NP_989789]
Coordinates
chr2:34829807-34836769:-
Coord C1 exon
chr2:34836688-34836769
Coord A exon
chr2:34833479-34836687
Coord C2 exon
chr2:34829807-34833478
Length
3209 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTGGGTCTTTTATTTGTAGTTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
GGAAGGGAATTTATCTACAAAGCAAATTGTATTTCTTCAGAGACCTTCTTTGCCCCAGAAAGCAAAGAAAAAAGAATCTAAG
Seq A exon
GTAAATAAACCCACGTTCCTGGTTTCTTTGTTTTTTTTTGTTGGCAGAATTTTAATGTTGTAATTGATTACCCAAAGAAGTAAAAGTGGCTTATTGAACATCTCTGTCATAAAGCGGCCTGGTAAACTGTAGCAAGACACAAGGAATTGAACTGTTAGAATGAAAGAAGCAGATGCTCAGATGATGTGAAAGCTCTTGTATTTTGTTCTCTGCTGGACTCATGGCAGCAGAAGAGGTGTAGAATTCTCTTTACAGCTCTGCCGTAAACCTGCACACGTGACCTAAATATCTCTGCCCACATTCACTGTCTGCAAAGCGGAACTGGTACTGTTGTTTCTTACCTTGTTTCTATCTAGTGCTAGAATGTTAACGAATTCTGCTAGAATTTAAGCATAAAGCCCCCTGAATCCAGCTAAATTATCTAAGAAAGCAGCTGACAGCTAGTAATGTACATATGCGGATAAACGTACGTATTCCCATTTCCCTTTTTAAAAGCATAACAGTGGAAACCCCCACCCAGCTGTGTCGTGGTGTACTCTTGAAGGGGAAATACTGGCACTGGGCAAGTGCTGACCTTCCTCTTGTGTAGGAATTTGCCTTGCCCTTTCTGTATGTAAGGGAAGGATCAGCAAGCCGGGTGAAGTACAGAAAAGCTTCCTGAGACCACATGTTGAGAAGGCTGCTCATACGGCCTCATTTTTATTCTGTTTTAATTCTCTGCGATTGCTGAGTGCTGGCTGGCCAGATGTCATCAACAGGATTGCTGTGCTCACAGCTGAGCTATAGTGGGATATGGGAAATGCTAAGTAGAGCTGAGCACTGAGACCACTGTAGCTGGTGTGTAGGTAACTGCAGATAGTTTTCATCTAGAAAGCTCTCACTGGATCGGAGCTGGCTTTGTGAGAGACACCTTTTAAATACAGCAGAGAACAGGAAGGAGTTTGAGCTGACCAAAGCAGGAGAAAGCTGTTGGGAGCACGTCTGTTGTGTAGGATTTACCCTTTCTTATTAGTGAAGCCAAAGCCCAGTTATTCTGTGATGTTGCTGCAAGGCCCATCTTGCTCCTTTTCTTTGTTTTCAAGTGATTAAAGCAGTGTTGGGGTGACGTGCCCATATTCAGTCATTCTTTTGGTGGGTGGCTGTAAGCAATTGTATGTCTTCAAACAGAGAAGCAGTATGATGCTGATTTCTTGTACTGTAATAACAAATGCATACCATCCAGATGACTCGATGATTTGTTTACATTTTTTTAATTTGGGGATATAAAAACTTATTTAACAATGTCTGGTTGACAAAACAAAGGATTTACTTGTTGGCAGCGTTAAATATACAGACATACTCAGGCAAAAATTGCCAACGCATTTTAAGACTGAAGGTCAAGAGAAATAGGGTGCATTGGTTGTGATCGTATAGACATCTGTAAGACTTGCTCAGCTTCTCTGAACAGCTGTTATGAGACACTTTGAAGATGCCAAACCTAACATTTGGTGAAGCCGCTGAACGTTCTGCCATCTAACATCACAGGCTCTCCAGGGGTTTTTAACTTAGGATATGGCATGTCTGTAGTGTTTGTAGATGGCCACTACTTGGAGGGAAATCTGCTGATGAGGTAGAAAGACACTGCAGTGCTGGAAGCCGGTCCATCCCATCTGTGCACACCAACTGACTGCTGCTCAGTTTAACTTGAACAGAAAAGGAAACAGGCAAGGAGTGGTAAAACTTCTTTTCAGTAAGACAGTGCAAAATTTGAGTCAGTGATGATCATATTCATTCACTTCATACAAAAGTGGTGCTAATTTCAGCAGAAACTGGCTGTATACTTTTTTGTGAAATATAATATATATACCCAAGTACACATACATACATATGTGCCTGTGTGGGTATGCAGAGAGTCTCCTGTAGATTCAGGATAAACTATATTGTGTTCAGGGCCCTGATCTTGCTTCTGTTAGAGAGAGTGCCGGGTTAGAAAGGAGCTGTGAGTGTGCAGCCCTACTGCAAAGCAAAGAGAAAATCGGGTGCCTGTGAATTGTGAACAGTTGAGCTCTAGAACTGAGATGTTATCTTTCACTTAAATATCATTACAGTTTAGAGAAGGGAAAGAAAGTCTCCCCTGCATAAAACCAAGGATCTTCTGAAAACCCATTTTTCTTTTTTGTAATTCAATTTTTTTTTTAACCTTATGTTCTAGGTAAGAGAAGGAAAGAGCACTGCTCCATCTTCATAATCAAATAAACTTACTAGGTTTTGAATCACTTTTTGCTTAAAGAATAAATAGCTAAATCAAACATTTATGAATGTGACTCTGTGCCTTGACCAACTTATTAGACACAGCCATGGTCACAGTGGAAAAAATGGCTTTTGTATTTATGGCACACAGAAAGTAGTGGGCACTGCCTCGTAGCCCATCCCTGAGTCTGCCCCATCCTAGATGCTTCTGTGGTACATCCACACACAATGAGGGAGCTGCTGTGGGTTGACTCAGCACTGGTGTGGGACCAGGTCTGGCTTTCCTTGGGAAGCTCGGTTTATTTTTTGATGAATGAAGACGTATATTAATAGTATAGTTGTCAGACCCTGTGTATGTTAGACCTGTACAGTCAGTATTTCAAAGTACTGCCAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTAATAGTGCTTAAAGCAGTTCTGAAATGGCAGCTGTGGCATGTCTTGTGGCGAGAGCTGTACTGAGGCAGCTTCATGTGCTCTCATCACAAGGCCTTCATACTGTTCTACGATTTAGGGTTTGGGGTATGGTGTTAGTTCTGCTGCTAGCCTGGTGAAAAAAAAATTGGTAATGCTGCACAATTGCTTCCTCTGTCAGCACTTGTGCAGCTCTCTGGTTGTGCTTTCCGCACAGTGCATGCTGCCTGCCAGGCTGCTGTGCACCTCGGCAGGGAAATGTCTTCTTGAAGGGAACCCAGCAGACACGTTATGCAGCAGAAGCAGAGTGCGTAACTGTCTCCGTCTGTGTGTCATAGACACACCTCTATGCAGGCTCCAGTGATCTTGAAGCCATCTGATTTAGTCATGCACTTTCTTCATCTTATGTCTTTTTGACCAAAACTAGCTTTGAATTAAAACTAAGTAATAAAAACATTTCTATTCAGGAGAGCAAATGTCAACTTGAGACTGTTTACAGGTGGCCTTTAATGTCTGGGTCTTTTATTTGTAG
Seq C2 exon
TTTCACTGGAGGTTCTCCAAAGAAGACATGCACAACAAACCGATGAAGAAATCAAGGAAGACTAAGTTGAGTTCTGGGGAGAAGCAGACGGCAGAGAAGCAGGAATTTGAAGTCACGGAGAACACAAGAAACTTAGCAGCACAGCTCTCGGCCGCATCAGGGCCTGGCCCTGAGCAGCAGCTGGACAGCGTCATAAACCTGGGGAATGAAACAGCTGGGGCTGACAGCAGAGGCACCCTCCATGACGGGGTGTCGGAGGGCACGTGTCCCGCCAGTGCTGACGCTGGTGACACTGGTGGCAGTGAGGCGCAGGCCTGCCCCAACCAGAGCGCACCCAACTGCTGTGAGGAGCAGGAGGCAGCGGGGCAGGACTGTGCACTCGGGCCTGACAGCTGCCAGGGGATTGATGGTGCAGCAGCGGATGTGGAGCCTTCTTGTGAGTAAGGCCGATGGCTCAGGGGTTCTGTGAGTCGTTGGTATTATCCAAGAGAAAAGAACAGATCTCGCTCATCATCTTCACTAACTCCATTGCTCTGTTCAGCGTTTCTTTGGCACTGCACTTACTTTGCTCCTTAGCATGCCAGTATCTTGATGTTTTAGGTAACTACAGGGCTTGGGCTTTCTAATGGCAAAATTCCGTCCACTTTGCAGAGTACGAAAGGCCGTCTTCTAGAGGTACAATTGAAATTAAAAATAGGGACAGAAAACATGCTTGGGCTTTTCTGTGACTGACACAGCAAAATAGGTTTGTATCTAGTGCAGGGCAAACGTTCCACTTGGTCAAAATTTATTGTCATGTTTTCTTGTCCACTTATCTTTGCTGGAGAAGTTCTCGTGCCATATGCTAGTTTGTCATTAAGCTTGTAGTGTCATGAAGATGGTTTTTGAGCTTAAACAGGCTGAAATCGGGAAGCGTAGGTAAGACAGCCATAACTATATTTGTCTCCAACAGCGGAGTTACCAATGACATTTTCTCCTGAATTTTATTAACTCTTGCAGATCTTCAAGCAATAAGCAAATCATAAACCTATTTTAGGCACACTGAGTAAACAAAACTCATGATGAATTTGTGTGAGGCAGATGATCTCAATATAAAATGACATTTCCTATTCTATTAAGCTTATGTTCTGTGCCAATTGATGGTTCAGTGGGGTTTCAGAAGATAGGAAAACAGAGGACAAGTTAAAGCTGGTAAGATGTGCTTCTTTCATTTGCTCTCTTCACTAAAATTGGAATTCAGTGTCACCATCTGATCCTCTCACATCATTTTGTACCACTTCCTCACTGTTGTAAAATATGCTGTGGGAAAGAACTGAAGTGATGCAAATAGCAGGGCAGTGGCCTTCGCATGTCACTAGATGATATTACAGAGTACAAATACCTTAATAGAGAGCTTTTTAACACAAGTAGTGATATTTTGGGACGGATGCCTAACAGAATTCTGTTACGCTACCAACATTTTTTGTTTGGGGGAGCTACGTTAAGATATTTACAAGTGAATGTACATGTGTAATATAGTTTCTGAACCAATACTCTCCAAGAACTTCAGTGTTCCTAAAAGGTAAGAAGTAGTTGTTTCTCTCCTCTTTACCACCTTGATCCCTGTGGTCAAGCAATCTGGTAGAAAGGTGAGAAATACGTTCTGAACTTCCCTGGGTTTTTTTGTTTTGTTCTTTTTTTTTCAAGCAAGAGCTCAGTAAGCCATTTGTTGGCTTTTTCCCTCGACTGGTTTGTGCCCGATAATTTTCCTGTCTTTAAACCAAAATGATGTACAATGAAAGAACTGTGTCCTGCATCAAATTCACACCTGGCGTGGTTAAAAGCATCTTCTGTGCCTGAAAATCAGACAGCTTGCAGAGCACTGCAGAGAAGGGAAAAATCATCCCATTTGGAGAATTCATTTAATCGGGACAATGGCACTCAAGTTGAAACCGCTCCATTTCATACACACAAGGCACAGGAGGATTTTTTTTCGCTGACTGAAGAGTATTCATTTTGAAGTCGGTGGTTTAACCACAGGACTGTAAGTAACTGGTGGTATTTTTCAATTATTTCACTCTGTTTCTCCATATTAGGCTGAAGTTCCAATAACCTCAAAAATGTGTTATTTCAGTTGTTCCGCATACAGACAAGTTCTCTGCTCTGGACAGTTCTAAGTAGCTGTTTGCAACTTTTATTAGCATAAGATATTTCTACTGATGGTTTTTGTCTTAAGGACTAGCTTTATATTAATCTTGTTTAAAAATGTACTGTATTTAATGAACATTTTACTAGTAAAAATGTTGCAATAGAATGAAGTTGCCAAATACTTTGGAATAGAAAGCGTTCATCGGATTGCAATTTGACCTTGTTTGCATCCCAACTGCTTACAAAACGAAAGAGAAATAAAGTTCATGAGGAGGTTTCCTATTTGTGGTAATTGCACAGCTGCTAATTATTTGTCCCTGAAAGGAGGAACTCAGGGTCTCTACATGGTAAAGAAGTGAAGCTGCTGATGATTGCCTTAGCACGTGTTGCGGAGTGCTGGAGAGCGGGCTGCTTGGTTGTCTGTCAGCAGTCTGGCAGAGCGTGAGGAAGCCCACTGTTCTAAGTGAAAGCCTGGTACAACAATTCATTCCTGTCGCTGCTGGAGCGGCTTAAGGTTGGGAAGACTTGACAAGAAATACATGTTTTTCAGTTTAAAAAGGGCAAACGGTTCAAATGGTCATGTAATTATTTCCAGCCTGGGACTCTGACTTGTTCTCAGTCAGTTCAGCAGTCTGGAGCTGTGTGCGTGCCATCCCCGCACCCGTCTTGAGAAGTGTGAGCTTCCATCACCGTGCAGACACGATACAGATGTGAGGAGTGCTGGCAAAGGCAGCCTGTGGCCACAGCAGGAAGGTTCTGCATCTGCTGCGTGTGTTTTCTACCTCAGTCTTACCAGCCATTTTAGGCTTGAAAAAGCGAGACCACAGTGGCAAAGGAAATGAAAGCAATTGATCGTCACTGTATTTGAAGCCTGAATAGAGGAGAGGGATGGCCAGGCGAGTGCTTAACTCCCTGAGCGGTGAGGGGCAGTGTCCCAGCAGTGGGGAGAAACTGAAGGGACGGCCACTCAGCTGGTAGTGAAGAGGCCGAGCCCCGTGCTTATGCTCAAGCAGAGCAGCCACAGCTCCGCAGCAGGGTTTGTCACCCCCAGATGAAGAAAGAGAGTGAAGCCAGGCTCTTTCCTCCCTGTGGAGGGCTGCTGTGTTTAAGCTCAACCTGGCAGAATCTCCCAGTAGGAATGCAGACTGCTCTTGGTGTGCCTCTCTTGGAAGGGGACAGCACCATGCATTGCTGCACACCTCAGCGAGGAGCTGTGTTAAGGTGTGTTCCAGGTGCGGGCTGGTGACTGAAGCACAGGCAGGCAGCACTCTGCTGTACTTAGCAAGCACTGCCCTTCTCAGAGCATCCAGACTCATGGTGTCAGCCAGGCAGAAGAGCTGTCTCTGAAGGAAGAGCACGTGTGTTACTGACAGGAGTTATGCAGGGTGGCTGCTGCTGAGAGCAAGTGGTCATCTGAAGGAGGCAATCATTACACGATATGAGTTCAAAGGAAGGAACCAGCTCAGCCAACTAGGGAATACAAAGGTTGAATGGATGAAGAAGAGGACTAGCTAAATGATGGAAAAGGGATTTCATATTGAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011241:ENSGALT00000045036:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.898
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(5.5=100)
A:
NA
C2:
PF152501=Raftlin=PD(7.9=26.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]