GgaINT0091849 @ galGal4
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30842696-30848104:-
Coord C1 exon
chr2:30848028-30848104
Coord A exon
chr2:30842822-30848027
Coord C2 exon
chr2:30842696-30842821
Length
5206 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTCTTTCTCCCACCCTTAAGGCA
3' ss Score
6.32
Exon sequences
Seq C1 exon
CAATTCATCAAAATGAAGAAAACAGCAGTCAAGAAATAAGAGGGCTGGAAGAGCTCAAGACTGCCTCTGATGCTCAG
Seq A exon
GTAAATGTGTAAGATTAATGGCGTCTTAGAAACTTTTTCAAGTCTACAAGCTGAAGGATCTGCTTTGGATAGCTCTTTAGCACTGGAAAATGGATTTCCCTCAATGGTCTGAGCAGGGAACCATAGGAAGTAGAAGTCTGCTGGATATTGTCTTATGTGACTATTTAGAATAAGATTGATGGTCACCCTGGGAATTAATTCCATGATGTTGAAATCAGACAGCATTTTTAAACTCTCTCTGTTCTTTCTGGATGATACACATAGCACATACCAGATGTGAAAATAAAACGAGTTGTATTTTAAGAGGCAAGAATATATGACATTTTGATTGAATTTTAATCACTGTAAGTAGACGTGCAATGAAATGAAGATACTTAAGAGTCACTTGAGTGTAAGCAACAACCTCTTTCTTTCCTTCCTTAACTGCCCCCATTTACAACCAAAGCATACTTCTAGATATTACTCAGAAGAAATAAAACTACATTCTTCAGTAATTTATTGTGGGATTTCTTATCCCTGTTGATTCTGTGAATCTTTTTTGATTAATCTTCAGCTCATTCAATCATTCAGTTCACACATTCGAACTGTGCATAATTATATTGCTCGTTGTATTGGGTACTGATTATTGTTTTTAATTTAAAATTGGTTTCTCCCAGTCCTGACTGTTTCTTTTTTTTCTTCTGTTCCTCTTGAAAATCTTTTGCTTCCTGCCAGTTATCACCATTTCTTCTCATGATGAATACAAATTGTAGCTCTTGTCTCTGATTTCTCTCCTAGCATTTTGCCAGCTAAAAAGCTGTATGTGAGAGAGATGGGATTTGTAATGATGTCTGTTCTATGCAGCCATGTTAGCAGTACCTGAACCCTTCTAGAGATGCAGGCTTTCTCAAGCACAGGAGGGTCTGCAGGAAGCTTCTGTAGGCAGCCTGGGTCATGGCAGACATCACAGGCGGAATGGAGACCATGCGTATGTGCCTCCTGTGTCAGCTTGTAACTGGGTATTTACCACACTCGTCACAGTAATACTTGAGCAGGGTGTTCTGAAATGACCTGCTCTTTTCTGTTCTTAATTATTTTCAGATATTCTCTCTTCTGCTTGATTGTTGTACAGCTTTGTTGTCAAAGTAATGCCTCCTATTTATTTCCATGGAAATTACAACAGATACAAAGAGCATAATAACACTCTTTGATAGAGCTACAAAACATGGTTTTTCAACAGTCACCACCATTAGCTGTACATTTTCACCAGTGATAAACAAGAGCCTGCATGCTGCACTAGTAAAAATCTGCATCAGTGGAGGTGACCGCTGTTGCCACTGCTGAAATGCACCACCCACCTCCTCACTGTGCTCACATCCACCGTTCAGTCTCCGTAAACGTTCAGCAAGCATCAATGAATGTCAGTGGGTGCCCTTTTTTCCACACTTCCATGTCAAATGCAATTCTGTCAGACTACCCCTCTGCTGCCATCTGTTACGCAGCAACAACCTGTAACAGAATATTGGTGAGAAGGTTCAACATCTACTGCCATACCAACAACATTTGCCTCTGTGGACCGACATAATGGAAGAGGAGGCATTACTTTTGGAGCAGCCCATGTAGTTGCTATTTTTGGGAAATGCTGGTTTACGTTTATGTAAGAGATATAAAAGGAAAGACTACATTGGTTGCTCAAAGCTTATAAGTAGACAGCTAGTAAGCTAGTAGGATTACATGGGCAGATGAGAATGAAAAAGAATTGTTAATACAGATTTATTCAGCTCTCATTCGGCTGCAAATCAGCATCTGAAGTTTGAAAGAATTTGAAACACATTTACAATTAATTATTAACTGAGCAGTTAAGAAAAGTGTTGAAGTACTCAACCGGGAGTAGAATGGTGGCATTATCAAAGCAGCTGTTGCTCTAATTTCTTTGTCAGTCCCATAAAAATGGCATTCTGCAAACATGGGGTACAGTTTGGGTGAAGGGTGTGAATGTTCTTTTCGCTTTAGTGAGGCTGTGCAAGTGACTGAAGCAAAGTAAATGATCTGTTAAGGCAGTGGCATATCGATATTTAGTTTTCAGGCTGATCAAAGTGGAAGCTTGCAATAATTAGGTTTTCAGCAGATGCAAAAGACATAGTTGTACAGTTCAAACAACACAAATCTCCTCTGTTAGCAACGTTTAAATGTGTGGTGCTTGCTCTAAACACTGTCTGCTTGACACAGAACTGACTTACCTCAGTAATTCATGAAGCAGGTGGAAGTCTGGAAAAAATTCTGAGCTTTTTAAACGGATTGTTTCTTAAACAATGTGCCATAGGGATGCCTTAAGTCACTGCCGTGTCACCCCTGGCATATTCATGTAAAGATTTTGCAGATGGAATGTTTTCCAATGAATGTGCTGGGAAAAAAAAAAGAAAGGCATTGTCAGCATCTTTCCTTTTCCAGCCTCAGTAGTGACTAATTCATTTTTCTTCCCATTAAACATTTCTATTCCATTTCAAATATTGTAGAAACACCTGCAATTGTAGTAATTTTGTGCTGTAAATAGTAGTAGAAGTCTTCTGATAAGGCTCCTACAATATACAACTTCATAATTTTCACCTTCAAATAAGTTAGTACTTGCAACTCGGTTGGTATATGTGAATTGGAGGACTAAGCAGAAATATTTGGGCATGCAGGATTTTGGAGGCTGTGTGCCTGCACAGAAGACAAATTAAGACTGCACGGTGCAAGTAGAGTGGCCGGTCTTTACCTTTTTCCTTAACAGCATTAGAGGTATTTCTTGGAAATTAGATTTATATTGACAAATGAAAATGACTGGTAGTATGAGACTCTAACAGTATCTTCCCAACCAGCTTTTAGAAGTTGTCATTGATTACTTAATTAGTTGAGCTGGATGCTTTCTCATATTACTTAGCAGAAAGATTTATAGTGGAAAATTGGTATAATTGAGAAAATCAGAATTAAAAGTGAAGGGCTCATATTTTTGTCCTTAGTTATAAAAAAACACATTTAGCATTTTGTTTTTCAAGTGTATAATTTGCTCCTGGAGCCTGGCACGTACATTTAACTTGACAGTACTCTATCTTTCTCAGGAATTTTTTAGTTGGCCTTTTATCCTCTGGAAGACTGGCGGAGGAGGGACATGTTAAAAAGGATGATTTCTTCTTGGTGGTTATTTGAAACAGGATGATAGGATTCTCTAAAGAAATTTCCCATTAAATAGAGGCGGTATTTGTGGCAGGGAGTTTATTTTTTGCTGCGGTGCTCATCCACATAGAAAGCACCAGTACCTTCTGTCTGAACATACAAAGAAAAGCAAGGACCATGTGATCAGGAAGTTGCCTTTCTCCAGTGTTCCTTCCAGTTGAACATACTGAAGCCAGTTGTTTCTCCCAAAACATAAATCCCTCTTCCTCAGCTTAAAATAAGAATTTTTAACCTTTGGGCTTTGCTTCATTTACTGGGAATCAATACATATTTGTTCAGCAGAGTGAACAGGGCATTTCTGCTTGTTGTCCATCTGACGTTTGGTGTGCAGGGACTTGTAACCATCTCTGATTCTCATAGATCATGGCCTGACTTGTCTGGGTGGAAGGTGTGAAAAGTGCCTCCCCAGTAGTCATAGCCCAGATCCAGAGAGTCTGTAAATCTTCATAGACCCAAAGCTTTGATAGGCTGTAACACTTTGAGCTGTCGTTAGCCTGCAGGGATTATGGCACACAGATGTTACACTCTGCTAGAAGCATCCCTCAGCCAGGAAATAAGCAGGTTTGGCTTTAGCTGATGTCCTCACAAAATCAGAGCTCTGTGTAGTGCAGATGTCTGAACTCAGCCAAGTCTGTGATAATGGCCCAAACTCCCTGTGTATATTACTGGACAAAAATGTGAATTTTAGGAAATAACTCATCCGACTATTTAAGGTGTTTACTGTAGAGTACAAAAAAGGCATGTAACATTTTTATTTCAAATAATTCAGTAGGGATGGCTCTTTGGATTCGGGAGGGGAGCCTGTATGTTCCATCAGCATCAAAGCAGTGGATTTGTTCTCTGCTCCAGCTGTTGAAACCTTACCTACGTTTCCCTCTTCCTTGGAGAAAACAGTGGGCTGTAGGATCAGTAGCTTGGATGGCCACTTTCATGCCTTCCGCTGTCATGGGAAGAAGTTTCTCAAGGCCAGCAGACCAAAGCCTGTGTGGAACTGCGTGTTGGTGGAGCATCCTAGGGCTTTGGCTTTGACTTACAAGATGTTTTATGGACTTCTGAGCAAATACTGATTTAGTAAAACTCGGGGTGAGCAGTAGAAAGAAAAGAGTGGAGGAAAAAGGTATATTTGCAGGCTGCTTCTGAAGTCATATAGCAGTAATGTAGCCATGCCACATGCCTGGCCCTCCGGAGGCATGTGTTCTTCCACCAGGAAACATCTGGGCAAATAAAGCCACGCAGCTCTCCATGCAAAAGCTGTGTCAGCCATCAGCTCTGCTGTGAGCAATTTAGCCCTTGTCAGCTAACTTTGAGGGACGGGTGTGCCGTACCTGTATGCAAACATGTCTGTATATATACAGCGTTTGTGTAAAACAACCAGTGCTGGATGTTATGGTGATATGCTCTAGCATAGCTTGAATACCTGGCAGAATACTGGGGGAAAAAAAACAGTTATATAATGTTTTTAAAATGAAAACCTCATTTTCTTCCTTAAACGGAATTGGACTATATAATTTGTTACACGGAGAATAAGTAAATGTTGCACAACTTTAACTCCTACAGTTTGAATGCGTGAAGCATTGTTGGAGGCAGAGCTGGGAGTTGCAGTGTTATTTTTAGGAGTGACTGTGTTGCTCTTCCTTCTTTTTTCCAGGGCCGTTCCTGGCTAACTTTCCCATGAGTTTTTAACCTCTTGCTCTTGTTCTCTGATGTAACAGGAAACAGGCTGACAGGAACAAACAAAACACAGCATATCAGTCGCACACATAGTAGCACTTGATTTAGTTAGCCCTGCCTTGTTCCTGCAAAGTAGATACGTTTGGAGGCTCAGATGTGCCCCAGCTCTTCTTGAGTGGTTTCCCCGGCAGCAGCAGTTAGTCTGTGCTTAGCAAGCGGCACAGAGTTCAGCAAATATGATCAAACAGATGCGTTTCTTTTAAGGTTGGAATCTTGTGGCAGTGCCATGTCCTGGGACTGTGGATTTAAGTATCTGTTTGCTCTTTCTCCCACCCTTAAG
Seq C2 exon
GCAGGGGTTTTGTGCAAGCTTCAAGAGAGAGATGACATTGGACGAATTGAGCTGGTCCAGAAGCTGGCACGAGAAAACTGTCAGTTTTTGCAGGCGGATAGAAAACAACCAGAGAAGACCGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]