GgaINT0091864 @ galGal3
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
NA
Coordinates
chr2:30673455-30676800:-
Coord C1 exon
chr2:30676622-30676800
Coord A exon
chr2:30673546-30676621
Coord C2 exon
chr2:30673455-30673545
Length
3076 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTCATACTTTTATTCCACAGCTG
3' ss Score
9.61
Exon sequences
Seq C1 exon
CAAGAGCTGATATACTTCACATTCAGCAGACAGGGCAGTGCTGAAAACACTGAGAATCTCAGTCTTCTACTTCAAAGATGCAACGAGGTCCAGCTTTGGGTTGCCACTGAGATACTTCTCTGCAGCCAGCTCTGCAAACGTGTACAGCTAGTCAAAAAGTTCATCAAGATTGCAGCCCA
Seq A exon
GTAAGTTTATAAAATTACAGTACAGATCCTTGAATATGCATGCCTTACATAAATATTTATTGGGAATGGAGAGTTACGTGCAAGAGCAAAGACAAAAAAACAGTTTACACTGTAGTAAGCATACTTAGGTAAAACAGCCCATAAACAACAACAGCACACACTTGCTGAAACTAAGTGTGATGGAATATACAATGTACAACTCTTTCCCAGCAGTTTAGTTAATGTATTTGCAGTATCAAATGGAAAATCCCTGATGTTGTAGACATACCTCCTTCCATAGTAGGGATACCTCTTTTCTTTGCAGGGATAACCTGAGGAACTCCAATATAAAGCTATTTGAGTATCAACACTGTTATTCACCAAAGACTGTAAGAAAAACAGACATTCTGTTTTAAACCTGAAAGGTGTAACTAGAGAGGAAACTAGCTGCAGTACTCTGTTGCCCCATACAGTCGTGTCTGGAGTACTCTTTAATTGATTGGAGCAGGACGGTTCTTCATTAAGGGAACGGAGCAGTTTAAATATATGCAGCCATTCTCTTTGCTTCTTTCTCCACTTGTTGGTCTTTTGCAGTATTTGAATATGCATATTCATGGTGAATGCATAATTTGTTCCCCTCATCGACTGGATTGATTTAATTTGCAAGGCAGTTACATACAAAAGCCTGTTGTGTGCTGAAGCAGTGCCTTTGGCAAAATTAATTCTCCCAGTCTAATCTTGTGTAACTCATAAATGTGATCTGATTTAGTTTGCAAGTTCTATGGTATATGGTAATATGTTCATTTTCTGCCTTATCAATGGCCATGTTTAGTCCAATTGCGTCAAAAGTGAATGGTTCTGTCCTACGTGAATGTAGATATATTTGTCTCCAGACTAGAATGTTGCTCTGTCTCAATTAATTTCATGTCTGTGTAGTGAATAGTCCAAGTTGTGGAAACTAAATACAGTTGTCAGTAAACGATAGACAGGCTCTCCCAGTGCATTGGAGAAGCACCCATCACCCAGCGTGTAGATTTTGACATAACAGATATGCAGAGAGAACAAAGTGTAGTTTGCTCGAGGTCCTTTTTTTTAATGCTGAAAAGCATGTTTCCAAGTGAAAATATGATTGTATCTCATCAATTCTGAAAGAGTTGATGAAGGGGAAACAGTTAAGGTACAGGGATAGTGTTCCAAGCAGAGGCCCAATCCAAGCAGCCCTGCTGTTTTGTTTGTGATGAAGGGAGAGAGGCAGGGAGCTCTGAGCAGCTCCGGCTGCTTCCTGCTCCCTCAGAATCAGCAAGGAATCTCTCTGATTTCCACTTTGTCAGCAAAATAACAGAACTAAGATCTTGTGTTAAGTGTGTGTGTGTGTGTGCTTCCTTGTTGAGGGAACTCCACCTGCCGAAGATGTCTATTCTTCTGTTGATGAGTTAGTCTAAAATAGAAAACAAGTGATTTGATAGAGAAAATGAGTTAGCATGTTGCTAGAAATGAGCATCTAGAGGAGTTAGAGAAGCAAGTCAGCACAGCGTTAGAATAAATGGATTGTAACATATGCCTTCATGCTGCTCAGGGGGTGGCTGAAATATATACCTTCTCTCTGCAGTTCCTTGAGAGAATTGGGTCCTCCGATAGCAGATTATCCAGGTTGTGTTGGTCTCCTTTCTCGTTTTGCAGAGGATTACCTCTGAGAGCTGCCTGACTTTAATGATAAAAGAACTCAAACAACAGAGTCAGGATTCAAGATAACTGAAATTAAGTGAGAGGCACCATCTAAGGATGGTATGCAGTGATGAGTGTGAGCTTTATGCAAACTTGTAACAAGTGCTGGAGAGTTTCCAGTTTAAAGCATTGGCACATACTTTTCCCTGATGATTAATCCCAGTGAAGACAGTGGATTCACTCATACATAAAATCATCTGAGGATTCTGTCTTTCTCATACTCACAAAAATACACATCTGTTTATTGTAGTCTTCAAGAATCTATAGAAGTGGAATCTTCTTTGACAAGGACTCTTTATTTCAGGATTTCATATTTTCTAATTGACTAGAAATAAGGAGGGACTGACTGTATGTAGTGAAATGTCAAAGTACAGAGGTATCAAGTGAATTCCGTAGAGACCAGTACTGGAACTAGTGCGAACTACAGCTAATTTATAGGGATATGTAAAAAGAACATTAATCAGATTTTCAGACAATAAAAATGATGAGGGATTGCAAATGCATTGGAGGATAAAAAAAAAAAAAAAAAAAAGAATGATCTAAAGAGTCTAGTGGCATGTGCAAACAACAGTGGGATAAGATTTAATTTAGATAGATGCAAAGTAGTTCAGCTAGGGAATTCTAATACCGAGCTGAAGAAATAAATGCATGATTGTAAAGAACAGTACTGTGACAAAGGTCCTTGGGTGATAATAGATGACAAATTAAAGACAAGGACAAAGTGTGATGCTGTTCCAAGTAGATATATTTTATGTTTATTTTATACTTGCAAAGGAGAAAGATGTAAGAACTTGGAGGGAGAGCAGTAATTATGCTCCTCCTTCCTTCCCCACTGTCTCATTACCTCTCCTCGGTAAGAAGGAAAAAAAGAAAGAAAAGTTAAAATGAAATACAAAGAATTCAATGAAAAATAATAGCAATATGGAGAAATAGATTGCAATTCATGGCCACAAGGAGAAATTGAAGGAACCAATGTACAATTTGCAGAAAAAATGAAAAAGGGGATGAAAATATTTATAATACAAGAGAATAGAGGTCAAGGATTTATTCTGTATGGTAAAGGACAGCAGAGAGTAACTTGAACATTGAGAAGGGAAAATTACTTCCGACAGCAAAGGAAGAAAAATAACCTGCCAACAACAGGGTTGATGAAACATGGAACACTTGCTAAAAAACTTCTTAGAGACCCCATCACCTAGACTGCAGGTGGCCATGGTAGGACGTTTAATGAGTTCATTACATGGAAGATGATTGTATGTTAGTGCTGAGAGCTGAAATTGGACTCAGTAACCTAGGATACCTGTGCTTTCCATTTATCTCTTATTCTGAGGACAAAAAGTCAGAATACAACATTCATACTTTTATTCCACAG
Seq C2 exon
CTGTAAAGCCCAAAGAAATCTGAATTCATTCTTTGCCATTGTTATGGGTCTCAACACTGCATCTGTCAGCCGGCTGTCTCAGACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(31.9=100)
A:
NA
C2:
PF0061714=RasGEF=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]