HsaINT0137428 @ hg38
Intron Retention
Gene
ENSG00000136237 | RAPGEF5
Description
Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr7:22140025-22145222:-
Coord C1 exon
chr7:22145044-22145222
Coord A exon
chr7:22140116-22145043
Coord C2 exon
chr7:22140025-22140115
Length
4928 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TACTCTCTTTTATTTTATAGCTG
3' ss Score
9.06
Exon sequences
Seq C1 exon
CAAGAGCTGATCTACTTCACGTTCAGCAGACAGGGAAGTGGGGAACACACTGCAAATCTCAGCCTTCTGCTCCAGAGATGCAATGAGGTCCAGCTTTGGGTGGCCACGGAGATTCTGCTCTGCAGCCAGCTGGGCAAGCGAGTGCAGCTGGTGAAAAAATTCATCAAAATTGCGGCTCA
Seq A exon
GTAAGTTTCTAGTGTGAGAAGTGCCATTCCTCTAGTCTTCTTGAGAGAGTACATTGTTCTTCTTTCTTTCTTTCTTATGATGATAAGGGTTGGGATATAAACGTGTAATATGGAGTTAAATGACTAAATGGCTGAAAATGTCCAATTTTGAATATTTATGTCTTTGCATTTCAAGTATTTATACCTTAAAGTAAATGTCAAAATATCAGACAGAAGCACTGTGCTCTCTGCCTCAGCACTAATAAGCAGGCAGTACACACATCCTTCATCCTGCAGCTGAACTACAGTGTGTCTGGGTGAGCTACAGGAGGCAAGAAAAAAGGGGATGATGATGTGCACAAGTGGGAATCATTACACGTCAGGTGCATTGTAGGACCTGCTCATTGCTCCTTGAGGCCCACCGTATGAACTTTTGCGAACTCGTTCATTAGAAGGCCCTGCACTGGCTGGCCCCACCCCCTGAGCCTCATCCCTGGGTGCACCCCATGCTCTAGCCACTCTAAATGTCTGTCCCTCCCATGAGCACCATCTTCCAACCCTGAACACTTGTTGGCTTTGCCAGGAATGGCCACTTGCACCCAGCAAATTGCTACCATTCTTCAAGACCTCAGTCAAATATTCCTTCCTTCCTGAAGTTACCCGATTTTCAAATGCAGGGGTACTACTTCTGCTACTGCCTCTACTTCCCCTCTGCACAGATATACTTTTTACCTTCCGAAAACTTATTATATTTATTAAATTTATCTGTTTATATAGGATTTCTTCACTAGGCTGTGTTCGCTTTCAAAGAACAGGGGCTATTTCTTATCAATCATTATACCTGGGTGCGTGGTACAGACCTTGGTAAATAGCAATGACTCAGTTAATGTTGAATGAAATTTTAGTAACTTGCTAGGAGCATCTCTTAAAATATCAGATTCATATCAAGGGTCTGTTCTTTGGACAGCTCCCCAGCAGAAGCAGGGAGCATGAATCAAAATCTTCCCCAGCTCCTTTTACTTCCTGCGCTTCCAGTTTTATTTCTCCTTTGTCTTCCAAAGTAGTTTTTATATCAAACAGTTTTCAAGTACATGTCAGTGCAGCATATTCAGAAACTATATATTGATCACTTACATGTACAGATGTGTACAAGGTAGTGTGGGGAAATCAGACTGAGTCTACACCAGTTCCTGCCTTTGTGAGGCGTGCAGTGTGTCAGTGGGTAATTCTATACCTCAGCTGGCTCCTGTGCAAAACAGAATGGGAGAATGCCCTAGAAGAAGATCTAAGTCTGTTGAGGCTTTAGAGGAGCGAGAGCTCATACCCCAAGGGTGTGGGAAGCAGGATCAGGAAAACGTTGGTGAAGGAAGTTGCCTTTGAATCTATTTGAATTCTGGGTGGGATGTGACAGGTAGGAATTCAAAAGAGTACACTCTCTGTGGGAGGCCAACTCAGTGGAGACAATGAAGCAGAGCCTGTGGTTAGACAGTAATCTGTTCTGATTTAGAGTGGAGGGGGATTTGTAAGGAAGTTGTGGGAGAATGATCTGCAAAGACAGATGGGACCAAATTGTAAAAGATCTTGAATTTCAGATTGAAGGGTTTGAACTGAATTGAGAAGGGAGAAGGGATTTTTTGAAAGTTTTTGGGCAGGAGACATGATCAGAGTTATCCTTCAGGAAGGTTGGTCTGAAACTAGCACGTTGAACTGTAGCAAAGAGACCCCAAGAGTAGGATAATTTTTCTTAGGCAAGAAGAGACCATGGAGGTTCCTGACCTGGTATTTGGTGTGACTGGGCATGGAAGGATAGATAACAAGATCTGCCTAAATCTTATTGATTACTTTTATGGTGAATGCTTTTTTAAAAAAATTTGGCCATTGTGTTCCAAAATGGCTTGTAAAATTCCTAAAGGTGAGGCTCTTTTGGGTAAAAAGCTTTCTTATAAATGCTAATTATGTGGATAAGTGGGAAATTAATGTTCCAAGGAGTAAGATGATACCACCCAGCTCAGTTCCCACTATAAGATTATATCTATCCTCAGGGAAATGAAATATATTCACATCTTCTCCATATGGCCCCATGCTCTTGAATGCTTTATGGTAGTGGTCTCTATCCCTAACCCATGGAATAGAATGCCAACAGAAACATAAAGTTAAATTCCCTGTAATCATGCTAGTAGGAATAACCAAGGGAAAATAGTAATTTCCACAATCATGAAGCGTTTTTCCTGCCTGAGGCATCCTATTTGCATATTCATGTTTCCCCTCCTTCTCACCATCCCCATCCCCCACCTCTGTGGATTGAGTGGATTTTATTTCCTCACACAAAGACAAAAGGAGTGTTTGCTGAACTGGAATGTTTAGTGTCAGACAGTCTGTTCTTATCGTGGAATGAATGACCCTCGTTAACAGAGGATTCCAGCCTGGAATGGCATCTAATATTTGCACTGTATCAATTTGTCTTCTCCAGAAAGTGTGTCTGTATTAATTCCTTTTTTTTCTTAACAGATTTAGATGTTAGTTATATGTGTGTTTTTATGGGTTTTTTTCCTTAAAATATGACTAAAAAAGAAAGCTATATGGACCAGGAAAATTGTTCATGAGGAGCTAAAAGATAAAAAGATAGGAATTCTAAGATTTCACATAGATAAATTAAGCTCAATAAAACGTAGAATAATAGACATCTTTATAATGAATAATGATAAAATCATTTCCCCAGAAGTTCTTGTTTTCTACTTCAGCAAATGCTGTTTAAAAGGCTTCTTGTGTACTAGGAACCTGGGTGATGGGCAGAATGTAAAAATGATTAGACGTATACTCTAGCCTTAAGGAACCTACTATCTAGCAGAGATTGCATAAGCAGTGGGGCCTCCATCATATCCTAAGGTGAAGGGACCCAGGGGTAAGAGAGACTTCGAACTGGAGCTTCCAGCAGGGGGATGGAACAGTTCTTACTGACCACAAGAGCCTCTACAGAGGAGGCTGGTATTTCAAAACATCAACTCAGGAGGAGATGGCACTAACTCAAGTCTGTTCTAGCTGGTGGGAACGTTCAGGGTTGTGAAGAGTCAGAAAAAGTAAAATGAGGCAAGTGAACAGCAGGATGAAGGGGAGTCACCATGTGAAAGGCAGTGATTCTCAAATGCAGGTAGGTTTCCCAGTCACAGACTGGGAGGTATCTTATTGGAGTTTATTCATGGAATATACCAAGTGGGGTCGACCCAGGAGAAAGTTGGCAAAAAACCACGTAAGGGGTCACTTGGATGAAGGTACAGGGCCTCACAATTACCAAGGAACTGCTGGCAGAGCCAAAAGCTGGACAGGAGGACCATGAGAGGGACAGACCATGCCCAGTGGAGGCTCAGCAGCAAGGTGCCTGCAAGATGTGTGTCCACCCCAGATACCTTTGGCATGAGGTGTGGAGGCAACACGGCCTTTCTAGGTTCCACTGTTCTGGGGATGGAACTTCTAGAATGCCCCCAGGCCTGAGCCTTCCTTGCTTGGAGCCATGTGTAGCTGGACTCAGGCAGTACCTAACCTGTGGGGCCGGCTCTGGGCATGCCAGTGTAGGCAGGGCCTGCCAGAGCACAGCTGCTATGGGTCTCCCTACTTACTCCACAGCTCAGCTTATTCTCCTGATTCTGAACTAGGTCATCTCATACACTATGTATGCAGCTGGGAATCAGTATAGCTTTAGGAGACAGCGGTTTGTATTATGTATCGAGAACCTTTAATGTCTTCACAGCTTTTGACCAATCATGGAATGACTGGAAGTCCAATGTAATGGGAAAAAAATCACAAATACAGTAAAAAGTTTATTCCAGCATTCTGTGTAACTGGGAAAATTGAAAATCATCCACAATAGAGGAATAAATTATGTAATATGCTCTTTTGATAAAATATTACATAGCTGTTAATGATAGTAAATAATCCATAGTATATAATATAACATGGTATTTAACTGAAGAAGCAGGCAAGATCTACACTATTCCCAGATTCCATGTGAGACATTGGTGGAGAGGTCAGAAGGGATGGCATCTGAGGGAAGCTAAACAAACATCACAAGGCCCCTGATACACGCTCTGCTTACTGCTAAGTACTTCATATTTTTACATAGTAAACGATCAAGGGAGGGTAATTTTTTTTTATTATTTTAAAGCCCTATCTCAGAGAGGTTGTTTTCTAATGCTCTCCAGATAAAGGAGTGCCTGGAATTCACAGCTATTCTGGCTGCCGTGAAATCCCGAGCTCCCCCTGCCATTCCAAGCCCTCTTAGCTGGCTTTGGAAATTAGTGGAATGTTGACCAGTTAAGTCTCTGGGCATGATTGATGTTATGCAGAGTGGATAGCCTCAAGAAGTGAATGGAGCTCAACATGATCTTATTTTGCATTTCATTTCCTTGTTTAACTGAGAAATGTGGAAGAGTATTCCCATTAATATATGCCGTATTTAAAATATATACATATTATAGTAGCTATTTTGTTGGTAGCAAAGAAAATGTGCCTAAATGTAATGGGAGGGGGAGCTTAGACCTGTGGGGTGAGAAGGGCTTGTCTGTCAAAAAATGAAAAAACATGTTTTGATGAAGGAGTCAGGACTAGTGAACTGTTAAAAGGAGAGTGGGGCGTATATAAAGAAACATGAATTTAAAAGAGTGCTCAGTTGAAATTGTAAATGCACACAACATAGGTAAAAAAGGAGGAATCTTGTGAAATATGAGGAGGGTGTCAAGAGCACGGATCTTTTCCTTTAGGTAAGAGTGAGCTGAGGCGTTTGGAATCATTTCTTTGGCATTAGAGACAGCTGAAGGGCAGTAAGGGGTACGTAGGCTGTAGAGCAGAATTCCTGAGCTCTGTGGCCTAGGAGGGTCTTTTCAGCTTTATCTTTTGTGATTATCTGGGGAAAGAATGTTTCCTCAAAGTGTCCTCTACTCTCTTTTATTTTATAG
Seq C2 exon
CTGCAAAGCCCAGAGAAACCTGAATTCTTTCTTTGCCATTGTGATGGGTCTCAACACTGCTTCTGTCAGTCGACTGTCGCAGACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136237:ENST00000401957:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(31.9=100)
A:
NA
C2:
PF0061714=RasGEF=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development