GgaINT0091869 @ galGal3
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
NA
Coordinates
chr2:30657124-30660412:-
Coord C1 exon
chr2:30660358-30660412
Coord A exon
chr2:30657831-30660357
Coord C2 exon
chr2:30657124-30657830
Length
2527 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCTCTTTCTCTGTCTTGTAGGCA
3' ss Score
11.64
Exon sequences
Seq C1 exon
CACATGATTGCAGATACCGTTCGATCATTGAGACATTGCAGAAATAACCAGTTTG
Seq A exon
GTGAGTAGCCAGAATTTGTTACTTGTTTGGCCTTTTTACAGTCTTAACATTGGTTGTTGGTTATTGAGTTACCTCAGTATTTTCCATGAATCTATGAGGTGTCCTGGCTTCCAGATGCTGAAAGATGTTATTCATCACCGTGGCTTTTCACTTGGTTTCTACCATCAGTATTTGTTTGCTTTTTTTAATGGACATTTCACGCAGTGGCTGAAGTCTTGAAGACACTAAGATCCTCTGGGTTTCATTGACTGGGTGGAAAGGAGTTGGCTGTGTTTGTGCCCCTGGCAGGGAAAATCTGCAAGTTGAGCTCTGTTTGTTTTTGATACTGGAGAACTTATGCAGAAAAGGCTTCTTTTTTTCCACTATCCATCCTATTAGACACCAGAGAATCTGACCCTAAGGACTCATGCCAGAAGACCCTAGCTTGCTTTGCTTTTTTGCTAACAGAGGAAAAACCTTGTTTTTCTCCTCCTCAGCATTTCTCATTCTCTGCGGAGAGGTTAAACGCAGGAAGGGGACAAACACAGCACTACTTGAGGAAGTGGTTATCGTTCTTAAGCCAGGAACACTAAACATGTAATGACTAAAACTAAGGCCACTAAAAACTCTTTTTCCAAAGAGCTTCAGAACTTTGCTGTAGCCTGAATGCAGGATTTTCATGGCTGGGGAAAAAGAATTTGGATCTTTTTCTTTAAGATGTATTTTCAGCAGCTGTCAGCATACAGCACGGACCCTGACAAAAAGAATATTAAAGATGTGTACGTATTAAAAATGTACCTTGGAGAATGATAGGTACTCTTAAAAGCTCTGCTGAACACCTTGTTGTATAGAATTACTGTACGTATGCACAATCTTTATCAAACAAAGTTGCTTACCATTATGGTTTTTGTGTTACTTAGATACAAAGAAAGGATGGGAGAGGGAGAAGGGCATACCTTTTGGTTTTTATTCAGTTAAACTAGGTGCTGAAGGAAATAGTGATTAATCCAAACTGCACTTCTGTAAGTTAGAATGTCTCTTATTTGCCATTATAAAACGGTAGCGTTGATTCCTTTAGTGATGCGATCTCTGCAAATCTCTCATTGTTTATTTTCTTTAGTGGTTTTGTAAACACTGCAACATAAATCTGAGGTTAATACCCAAGATTTATCTTATAATCTGGTAGTTTGAAGTGCATGATTGTTATTTTATTTTACTGCAGACTTGATTTATTGTGAAGCTGGCATTTAAGAAGCAGCTTTTACAGATATCCCTGTAGGCATTTTATTTTTTGTTATATTCATTTAGGCATGAAATGAATTCACTGAATATTTATTGAGACTTTATGGACAGTTTCCTTTTCTAGTGGGCTTATTTTGCTCTTAGGATTGTGAATCTTTTTACTGCATCGACTCCCAAATTGGCCTGAGAGTGGCAGGCATCTTACTGTAGGAAAAAAAATCAAACAAGAGCAAGCAAGGCACGTTATTATTGCTTATGAACTGTATCAAGTGTATTACGCATGCAGGCCAAAGTGTTTCTGGATTAGTTTCTGATTAGGTTCCAAGCAAGACTGAAATGCCTTTTTAATGGAAATAATATTTTATTTTTACATACTAAATCCTGAAAACAAATAATAGTGTTTCCACAGTCAAGCAAAGCAGCCTGAACAAATAACATAGTTCAAGCTTTTGTAATTTCAGGTGTTAATGAGAAATACAAATGTTCCTCGGTGTGTGCAGCACAGCTGCTGCGAGCCTATTCCCCGAGAACAGAAAGGTCACCAATGTGTTCTGACACAGATTTATCACATTCTCATGTTCTCTCCCACATTTCTGAAGTCAGAGGGGTGCTTGGAAATAGCTCCTGAAAATAGCTGCCCAGGAGCACCATTAGCAGCTGTATGCAGAAGCTGCTGCTTTGACATCCAGTGTTACGCTGCCTCAAATAGTGCTCATTAGAGTCAAGGAGGATGGTTGGTTCCTGGAAAGCTGCTGGTGTAGCTGGAGAGCGTGGAAAAAAGGATGATAATGAAACAAAAGAGGGAGGGAGTGTGTGGATTAAGCTGATTGGTTCTGGGAGTCTTGAGCATTTTCTTCTTGAATTGATGGTAATATTATTAATGGACTAGAGCAGAGCTCTTCGACCTTTGACAGCCTGTCAGCAGTCAGCAGCAGAGGGCAATGTATCTCATCATTTTGTCTGCCTGGCTCAGTGGGTCTCAGCAGCCTTGGATGTAGATCTTCCTGTTCCATTTCTGGTCACCAGCACTGCTGGATGGTTTCACAGGCAGTGAGTTCCCCAGGTTAGTGCCACACACAACTGTAGCAGAAACTATCTGCTATTCAAGCCACCCTTCAAGTTGTAAGTGGCACAGCTAACTCCTCTTGCCTTTTAAGCACCTATGAAAGGACAGCTGTCTTCTGAGCCGCTGTGCAGCACTTGACATGGTGGCACATTGGGGGCTTGGCAGTGCTACGATGGCTCACAGAAAAGCAAAGCAGGCAAGGATTGGCTTTCTGACCCGTTCTCTTTCTCTGTCTTGTAG
Seq C2 exon
GCAATGAAGTTCCTTCGAAAGAGCATCATGAACTGAAGCCATACATCCACCACCTGCACGTCATCGACAACCAGCAAGCTCTCTTTGAGCTTTCTCACAGGATAGAGCCGCGAGCGTGAGCGTACACAGCTTCGTATACCTTGTAACTGCAGCACTTTGAATTAAGTGAATGTTTATGCTAAGCATGTTGCTTCCCTATATGAGAACAGTTTACTGAGTTTTATCAGTAGCTCACACAACATGCACAGGAAAATCAGGCAGAGCAAGCAAAGGAGCTGCTTGCAGAGCTGCAGGGCAAGCTTGGTGCCATCCCCATTGCCACCAAACGGAGCAGCACTCTTTGAGCTCATGAGCTTGGTTTCTGTGAAAATACTGTTTGGTCCAGTGTAGCTTTCAATGCAGATTCTGCCAGTATTAGAAAGAAAGGAAGCGTCGTGTCACAGCAGCAAAACATTTCCGCAAGCAACATGCAGCAAGGGGATTCTCAGCTCACCGCAGTACGTACCTCGCTAATTCAAGGTTGCCAAAAATACCGTGCAATCCGTGCAGCTCCCCTGAGTCCACCGGAGCGCCTTGTTTGAGATAAGTACAGACAACCAGGAGTGGAAACATAAGACAGCAGTGCACCAGGTGAAACTCAAGAGCCTGTCATGATCTGGAGGTCAGAACTAAACCGTTGATAGTGTTCTGGCCCCTCAAGCATCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]