HsaINT0137433 @ hg38
Intron Retention
Gene
ENSG00000136237 | RAPGEF5
Description
Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr7:22118238-22125658:-
Coord C1 exon
chr7:22125604-22125658
Coord A exon
chr7:22122522-22125603
Coord C2 exon
chr7:22118238-22122521
Length
3082 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTCCCCCTCTAAACAACAGGTG
3' ss Score
7.92
Exon sequences
Seq C1 exon
CATATGATCGCAGACACTGTCCGAACCCTGAGACACTGCAGGACTAACCAGTTTG
Seq A exon
GTGAGTAATTGAAGTCAGGTGCGGAATGTAAATTGACTCTACGTTGGTACCAACTGTGGTCACAAGTATTGGGTGGTAATCAATTTAAACAGATTGAAAAGTATCATATGTATATACATACGCATATTGTATATATATAGTAGATTGTCTCTTTGTTTCCTCACTGCATGTTGGGGATGCAGAGGAAGACAAGATATGGCAGATTATTATCCCCTCATGGCAGCAAGTTTATGCTGTGAAGAGTGACTTTACACACTCAGAAACCTCCTCCCCGCAACTCCCGCTGACTCCTGTCCCCACAGTGTCTTGCTTTGCTTGTCCATTGGCTCAAAATCACTGGTGAGTTTAGCAGGGGTGACCTTGCCCCTAACCTCTTTGCGTGGAGCCTTCCTGGAATAGGACTATAGCTTGTAAAAGTGCCTAAAGCAGCCTTCCAGAATCTTTTCTCCTCTCCAACAAAAACTTCCTGTCTGGAGCTGCCTTTCAGCTGCAAAAGTGTGGTTCTGAGCACTTTTGTAGAATCCCCACTGAGACTAATGTATGTAGGAATATTTGTTCCTTTTTAAATCTCAGCCATAATTTATACTATGTTTAAATGGTGTTAGAACATTGCAGGAAGGAAGGAAATCAACTTCATTGAGTTGAAGGAGCTTTCACATGGGCAATGGAATCCTGACATCAGTCCTAGCAAATGGGGATTATTAACCCTGTAGGTGTAGAACAAAAAGCAGAGACTCAGAGAGATTCACTTATTTAGCTATTATTCAGACTGAGTCTACCTTACCTCCTCGCCCTCTCTTTTGCCCTCTACAGATCCTGTGGATACAAAGGGTAATAAAAAATAGAAAATTGAGTTCAATAATTATAAATTAATCAAAGGCAACCACTCAGTTCAACTTCATTTTTTAAGTAAGACATGCCCATTGTAAAACAATTTTTTCAACAATATAGAAGTCTATATAAAGTAGAAAATCAGAGTCCTACTTCTCAAGAAAAGTACTGCTAACAATTGAGTACACCTGCTTAAGAATTTTTTTCTGTTCAGTGCTGGTCTAGGCTGGCAATATTGTCCCCCAACAAAGTAAGTTAGGAACTGGACTTCTGTGTGGATTATGTTTTCTCTTTGAAAAGGAGACTTATAAATACAGGACCTAATTTTCTAAATATTCACATCAATTAGTACCACTTTAATATACCTATATAATTCTTCATCAAGCATACAAGCGCAATGCAGTTACAATAAAAATAGTAATCATAACATCATCACAGAGATTCACTGAAATGTATAAGCATAATGCTGATGAGTACAGCTTCATATTGCTTTTATCCTCCTTTGCTTCCCAAGTGTTTACTGGGGATTCAGCTAATTCTAAGATATCAGTCTCACTTAACCAAGGAACTCTAGTTTATATATGCTCCAAGTATAGACAGGAAGGTGATAGTTATACTAACTTGTGTGGCCTTGAACCTGCCTTGAACCTCCCACTCATCAGAGAGCAACCCTCTGTGTGGCACTGAGCAAAGGAGAAATTTAAGTAACTATCAAGCCAGTTGATGTTCTAATATTTATATACAGTATCTTTAAAAAATTGGTTTGGGAACTGAATTATCCGAATTCATTTTAACGGTTTATATGAGCATAGTAAACCAATGTCAGCATTTGGGATAAAATATGAAAATGTTAATCAAGTCACTTATGCATTATAAAGTGTCATGCAAATGTCAGTTGCCATGGTTAGAACCATTCATTGTGCCATCTTTTTAAGGCTTGAAAATTAACATAAAATTACCTTTGTAGCATCGTGTTATCCAAACCAATGTTTAACTTTCTCGACGTCTTCCAGAGAAGGCATTCTGGAATAAAACAGCTTTTTGTTACTTTCAAACAGGTGGGATGGTATAAACTTTAACACCTAGTGTGTTTACTTGCTAAAACCAGGAAGCCTTGTTTCTATTAAACCTAAGAATTATAAGCCACCCATGTCATACAGGTCTTAAATTATTTCCTCATAAAATACATTTGTTATAGAGGAGAAAAAAGGGGGTTTCACCAAGAGAAAAAAATGCTATAAGAAAATGCTCAGCCTCCTGCATTTCCCTTCCCTCTGCTCAAACTGAGCTCCAGCAGCTCACCCTGCCTGTCCCATGCATAATCTACAAAGCAACAGGATATGATGTCTTCACCACTCACCTTTCCATTGTTTTACTGTAGTGCAGTTTGGCCAGTGTTCCCCAGCCTCAAATGGTTTGCTTGTGTGTGTGTGTGTTTGACTGTGGTGCACGGGCTTGCCTCGTGGTTCATGCTGCTTCATCCTGGTTCCTTATCAGCACGGACGCTAGCAGGGTGTGGATGTGTTCACAGTGCACTAAAGCCTCCTTTGGCCCCTCGATTCCTTGACTGCCCTAGATATGTGAGTGGAAAAGCCCCTTGTCTTGTCCTTCTCTGGGTAGACTTTAGTCCATACACATACTTTCTGAAGCTATTTCGTCTGTTAACCACATCTTAGAGTCTGTTCTGTTGTATCTGTTCATTCAGTTGCTCCATTAAATTTTTTTTTCCAAAAAATGAGAATACCAAAGAATTGTACAAAATCTAAACAACAGAAAAAGAGTGATTGCATTCATATGCTAAATACATTATCAGCGATTTTCAACGCTTCTAGACTGAGATATAGGACCCAGTGCTGGCCATTTAAACAGGTAACTGCTGTGAAAGGCTACCTAAAAGGGCTCAGGAACCATCTGTCCTGGGTCCGAATCCTGGCTGTGACAGTTAACTTGCTGCGTGACTGTGCTCAGTTTCCCCATCTGTGGAATGAGATAATAACGTAATTTCTAAATAATATACAATGTTAGGTAATAAATGCTATAAGTATCCTGCCAGTCTGATTGCCTGACCTGAGGAATCCATTCTGAGCTGAAAAAGCATTTCTACTGTAGGACAAGGACACCTCTTATGGGATTCTGACTAATGAGAACCCACCTAGTACATTTACTCAGCCTTAGTGTGGGGTTTTGTTGGTATGTAGATACAGCATTACTGCTCTCCTGAGATTGTCTTTTTTCCCCCTCTAAACAACAG
Seq C2 exon
GTGACCTGTCTCCAAAAGAGCATCAAGAGTTAAAGTCCTATGTTAATCACCTGTATGTCATTGACAGCCAGCAGGCTCTGTTTGAGCTCTCACACAGGATCGAGCCTCGGGTGTGAGCCCCACTGCCTCACCTCCCCTGTATCTGCAGCACTTTGAGCTACGGGAATGTCTATGCCAAGCACGTTGCTTTCCTGTGAGAAAAGAAGTTGCTGAGTTTTATCAGTATAACCCAAGACATTCACAGGAAAGCCAGCCAAAGCGTGTTCAGGAAGTGATGTCAGCCACCAGAGAGGGGGAGAGGTTTCTCCATGCTACTCTCGGGACAAGAAGGCAGAAGGAGAGTCAGAAGCATTCTTGAGATGGAGAAGGCTGGTTTCTTATGATCACATTGTTGATCCAGTCCAGTTTTCAATATGAGATGTGCCAGCATCAAGACAAGACAACGTCTTGACATGCAATGACCAAATATTTCATTAAGAGCGTGCATGAAACAGGAAGGAGTTTTTACTTTGCCTAGTTTTAGATTACTGTCCATAAGCTGTCAAAGAAGTCATTCTTTTGAACACCTGATGACAGAGACAGCATCTCTAGATCTCCAGGGAGGAGAGGTTTCTGTTGATACAACCTGTGACATCACCAAAAGCCACTTGTGTCTAGGGAGTTAGTGAGGACTGCAGCTAGCATCCATGCTCTGATGGGCAGATGAACAATGTCAAGGTGTGCATCACTTTGCACCACAATCAACTATTGACACATGCTTGCAGGTGAAATTAGTTTCTGTACAACTGATTTGCAGCTATAGGCAAGGTAGATGAAGTTGCTTTGCCAGTAAGGAAAAATAGTAATCTTTAAGAAATTGACTCATTGTTTAATTTCTGGGGATTTTCTTTATACTTCTAAGCAGGCTCTTATCTTTTATTGGACATAATATGATTTTGAAAAAGCACAGTGCCTGACACATTGCAAACACTCACCAACTGCTTGCTGAGGTGACAGAGTCACAAAAGTCTGCATTCTTGTGCCTGATGATGCATTTTGCGTACCTCATACAGGCTCCTTGCCCACACTATGGAATGACAGCAGCCAGTGCAGGGAGGTTAAGTGACATTTAATGAGTGAAGCACTTAGCACTCTCTAGGTAATAAGATAGTGGTAATTACTAGTGTTTTGGCAAATGAAAAATGCCCTGAAATAGCCAAATGTCTGATTAATGTTGGCAACTTAGAAGTCCTATAATCCAACTACCAGCCAAAGCAGGGAGCCTTTCTATAATTTGCCTTTTTTTTTTTTTTTTTCAAAATCTGAGTCTTCTAAAATCTTATTATTCCCATTTTTACCAATTGAGGCTCCTGTAGCAAATAAGACCTCTTGATATTTTCAAGGACTGGTTAGAGGATTTCTTTCAACCTTCACATGAACAAAACAGCCTATGGGTCAAAATAATGAAATCCACCCCTGCCTGCTAGATACTTGTCACCTTGCTAAAATGCAAGGGCCTGGTCCATTCATTTTCCAAATGCAGGAGTCTTGGTGCACTTCTCACTCTTCCTGCCTGTTCATCTCTTTCATGCCCACACAGACCTGTTTCCTTTTTGTCTCATCAACGCCTCATTCATCCTCATTACTGAGGCGTGTCCAATGCTTTTTGACATCTTTATAGCAGTGCTGTTTCCTGGGCTCAGGAACCACACTGAGCTTGAGATACTGCTGGAAGGAACCATGTGGAGAGAAGGTTTGGGAGAACTTTGAGAGAGACTTAGTTTGGCCCAGCATGTAAAACTTCAGTCCTGAACATTTATAGGGTTTTATAGAAGGGCATCCTCCAGGGCTGGTCCATTCAGAGAAATGCTGCATGCTGCCGTCATGGAATGTGGCCCACAGGACACCAGAGCCGTGAGAACCGGAGAGCAGACTTCCCTCACGGCTGGGCTGAGCAAACCCTCCAAAGCCCTCCTCACGCAGTTACTAACAATAGCATGGGCTTACAGCACAAGCACGTGTTCTCACCTTTTTCCTATGCCCTGGACTAAGGTTTGGCCAGTGTAATCATATAAGGCCATCCTGACATTGTTTCTGTGTTTCAAAATTTGGATTTTTATTTACATTAGAACTACATTGCTCCTAGTAGAACATTACCTTTAGGGGACTAATTTTCCATGGAGAACTATTTCAGCATATTGCATGCTGCTCAGACCCCAAGTCAGATATGCCCACCAAGCCAGATGAAGCTACACAAATGTGGTATTTAAATGCATTTTGTACAGTGACTTCAGAGTATCTCACATGACATGGGTGTAAACTGGCTGGGGAGAAAATGATGCTTGTTCACCTCTTCCTCCAGCCGTGGTTAGGTGGTCCTAGGGGTAGCAGAGGGAAGGGAGGATTTTGTGCAGTCAAGATTTGCTTTTCCATCCTTGTCTTCTGAATGTCTAAAATCTCTGCATCTTTCTGAAGTTTAACAACTGTCTCCAGAGGTTTGCCAGGCAGCAGCTCTCAGAAGTTTCCAAAGCTTTGCAGAATCTTAGATCTGGAATTAAAGAATTCAAGCCCGAATTGTGAGAACCAGATATTACTCAACAGAAAGCTCTTTCTAAGGAATCTGAGCTGTTCACTGGTGGACAGTGGTGGGGCTTGAGTGCTCCTTGTTAATAGGATGGGCCATGCACCCTCTCTGGATATTCACCAAGGCCTCTTCAGAATAGGGTTTGTTCTGGCTAGAAGCGTGGTCTAGAAGATGGCTAAGCTCTTTGCCAGCTCTCATTTGGAGTTTTATTATTGCATAAAATCTTCGCTCACTCTGCAAATCTTACGTAATCTGGCACCTTCGGCACCAGGTGGTGCAGGGGCACTTCTAAGTGGGCTCTTTTTGTTACAGCACAACTCTCAGACAGTCCTGTGGGTCTTTGGATTCGTCAGCATTCCAGCAAACTAGCCCTGCTTAGAAGTTAGCACAAGACAGCAGAATGCAGGACCCCGTAGGCAAAATCACAACCTTGCTATTAAAAAAAATTTTGTTTTACATACACATTTGCAGGTGTTCCCTAGAGTGTGGTGTTTTGAATTTGCTCTTTGTCATCTGTATAATTGCCAAATGATTATAGTGATACACATGACCTGCATTCACTTTTTTCTAGTTTCCTTAATTATGTTTAGAATAAATTCATTTCCCTAGACCGAGAACCACAAACAGGTAGTGTGGAGCATACACCGAATTTAGAAGCATGTGGATAAGGTCAGTGCTCACACTGCCTAGTCCACAGGGAGAGGATGCTGCATGAATATATACTTGCCTCTGAGTGGAGGAGAAATCGTGGCATGAAAGAGAGAGTACCAGTGATGACTTCTTATCCCTGGAGCTGGGCTTTCACTGCTACCCATATCCCAGCCCTGCGAGTCTGTTCTAGCCAGCACAGACACCGCAGATCCGGAACTGAATGTTCCTAAATGGCGCAGCCAATCCAGGCTTTTCAGAAACTGGGCAAAAACATTAAAATGGGGACGATCGGGTCTTCCGCAGTGGTCCAACACAGGATTTCTTTTAAATGTTTCAAAAACATGTCCTTAAAATTTCAGCCTGCTTCTTAGCGAGTGGGCCAGTTTTGCTTAAAACTGGTGGGGGGGCGGGGGGGAAGTTTTTAAAAATTGCCAAAAAGTTAGATGCAAATGTATTACTGTATAAAGCAAAGCTGTATATACTAAACATTTTTTAGCAGAGTAATATTTATTTGCATAGTCTATTTATTGTATTCGTATCACACTGTTATTAAATACTGGGATGAAATCAGTGACCTGAAGCAAGAAATCTTGCCTTTTAATGTATCATTAATTAGGGCTGCTGTGATATTGTCAGCTTGCATTAACAATTAGAAGATAGAGAACCCGCCATCAGGGTGTCTACCTAACTTCTCAGGGACTACACTTGGTAGTTTTCCACCATTTAAAGAACTGGTAAATATGAAACATTTGTTGAGTTACCAGAATTGCCATTAACAGTGTTTTCTTTCCCATATTCCATGCTTTCTGCCTCTGTGTATATATATAATATATATGTATATGACTGTGCTGTGTATTTATCGAAGCTAGTAAGCAATAATTTATATGTAAAAATGGCCAAGCAATATAAGGTTAAAACTTATATAAGTAACCCTTACCTTATCTTGTATTTTCAATTTTTTTTTAAAACTGCTTTTCCAAATATGAGACTATGTTAAAGACACTATTCATGCCTCTTAGTTTCTTGCTTTCTCTGTGATGTGTGTGGATTAAATAGCTCTGTTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136237:ENST00000401957:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.5=5.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development