GgaINT0092072 @ galGal3
Intron Retention
Gene
ENSGALG00000015142 | F1NJD5_CHICK
Description
NA
Coordinates
chr2:109270887-109272235:+
Coord C1 exon
chr2:109270887-109271117
Coord A exon
chr2:109271118-109272107
Coord C2 exon
chr2:109272108-109272235
Length
990 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
AAACTTGTGTTTCCCTGCAGTTA
3' ss Score
9.36
Exon sequences
Seq C1 exon
CCACCAGTGTGCGGTTGGTTCCCCAAAATCTGAAGGCTGGCAGTGCCACAGTCCCCCTGCTAATAAAGGATTTCCAAGGGTTCAGCTGTGCTCAGCCACAGTCCCTGCAACTGTTTGTTTGTACGTGTACTGCTGATGGCGGATGCAAAGATAGAATTATTGGCACTGGGTCAGTGGTTCTGGGACCAGCAGCGATTGCACTAATCATCTTGGCGCTTTTGTTTCTGCTGC
Seq A exon
GTAAGTAATCATCCTGTTATATCAGAAGCACCATGAATACGGTCCACAAAGCACCAGGGGATAAACTGTTGCGCTCCCAGGTTTTATCATCTTGATGTACTTTATGTAAACTCCTAAGCTGTGTGCAGTCATGGCACATCTCCAGGCAATTTTTGTAATATCAGCGTTATACATTCAGAAGCTGTGCATTTTGAAGTTAATATGTACAGCTCGTAATATTAGTTTATAATACTATAAATAATAGGTGGGGAAGCAAGAAGGAATCCTTTTAGCATTTCCCACACTTCTCTGTGTGAACCCTGGCTCTTCCCACTCAAACCACAGCACTCTCTCAATGTTCTCCCTAATTACAGACCCAGGTCCGGTTCCTTAATCTGAGCAGTACATGATGTGAGACATCACGTTGGTAAGACAAGGCAGAAGTTGAAAAATAAGAGAAATACTTGCAGTCAGGTTATGGCCATATATACTAGTACTGCATTTGGAACAGCAGTAATTCATTCTTTGTAGTAGTAGCACTCTAGCTATGAGAAAACAAAGTTAATTCCACAGAAGTATGTTTTGCTTCTGAAATTGAATCATTTTGAGCTCTCCAGGTAATGCTGTAAATGTGACCACTCATGTGAGCGTTCCACATGGAGGTGTCTTGGTCTACTTAGTAACAGGACAGGAGTTGGAAATGCTGAGGTTGCACGCTTTTGGGGCTGGTTTTGCTATATGAGATCTTCAGTAGCAGTGTGGATAAATGCATGCACAATCATCTGCAGGAGTGACAGGTTCATTGTCAGTTTACTGTTTAGAAAATCATCCGTGCATATGTTTCCAGGAAATACCTTGAACTTCTGGGAACTTGGCTGTGGTCCTTATTTGTTCGTATGATGTTCATTAACTCATTAAAGGCACATTTCTGGCCAGACTTTGGTATTGGCTGTTAACATGCTTTGACCCTAAGCAGCCCATCACTAATGACAAACTTGTGTTTCCCTGCAG
Seq C2 exon
TTATTCCACTATTACTGCTGTTGTGTCCATGCGGCTCAGGAGCAAAGAAGGGATTTGCTACAATACCGGACTGTAGCGAAGAGACGTTGCGTAAATGGAACAGTGAAGGAGCAGTTCCTGAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015142:ENSGALT00000024433:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTGTGCGGTTGGTTC
R:
GGAACTGCTCCTTCACTGTTCC
Band lengths:
348-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]