RnoINT0051399 @ rn6
Intron Retention
Gene
ENSRNOG00000016526 | Dsg2
Description
desmoglein 2 [Source:RGD Symbol;Acc:1311143]
Coordinates
chr18:15594514-15596429:-
Coord C1 exon
chr18:15596202-15596429
Coord A exon
chr18:15594636-15596201
Coord C2 exon
chr18:15594514-15594635
Length
1566 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
CTCCCCTTTGCTTTGTACAGTGG
3' ss Score
6.65
Exon sequences
Seq C1 exon
GTACCAGTGTGCTGCTGCAGCCAAGCGAGCGGAAGCTTGGGAGAAGTGAGATTCCCTTCCTCATCTCCGACAGCCAGGGTTTCAGCTGCCTGGAGAGGCAAGTCCTCCAGCTCACCGTGTGCGAGTGTCTGGAGGGCGGTGGCTGTGTGGCTGCGCTGTATGACAACTACGTCGGTTTGGGCCCCGCCGCGATCGCCCTCATGATTCTGGCTCTCCTGCTTCTGCTGC
Seq A exon
GTAAGTCTTCAAAGCCTGTATTCCCAGTGCCTTGACGAGTTTACTAGGTCTTCAGAAAGGACTTGCCACAGCCGTGCGCCGTGTGCTTATAAGGTTGTTTTTACAAACGTTTATTCCAATCCAAGCGTGATTCGCGCGCTCAACTCATTGCGTCTCCTCTGTCCCCATTCTTGGCTGCTCGGCTTGCCTCTGCTAACCCACTGCGGTCAACCCTTTCCTAAGCACCTCGGTGTGCCCTCACGCTAACAAGCTGTGTCCAGCTAGTCCTGCCTGCCCTCCGTTCTGCCCTGTAGTTGCACTGTACTTGAACTTGGGCAGAGTACCACCTCCAAGACACCCCAGGCTATCTCCACGCAAAGAGGAGAAGCCTATTAAAGACACTTACAGGTGTCTAGTTCAGTGCAAAGGTCTACAGGGCCCTCCAGCCCACCAGCTCTGTTTGATTGTGACTGACTTGACTTACCGTCGACTCGGGCGTGCATCTTTTACCCAGGAATTCCACGCCCTCTCTTCCCAGCTTCCCCGAAGTCTAACCTGGCACTCAGCCCATGACATTTGACTACTATTGATTTTTAACAATGGTGCTTAGGAGCTGGGGGTGTGGCTCCATTGGTCCTGTTTATGTGGCATGCCTGGGCTCAACCTCCAAATTCCATAAAATCAGATATGCTGTGCAGATCATCGGTGACCCCAGAACTCGGGAAGTGACGGAAGAAGGGTCTGGAGTTCAGGATCTTTCCCAGTTACATACTGAGTTCAAGGCCAGCCTGGGCTATGTAATACCCTATCTGATTGATTAATTAATTAATTGGTAAATAAATAAATGCAGGCAAAGAAAAGAAAATGGTGCTCGGGTAAGTCAAAAGTGAAGGACCAGAGAGTCAGAACTTATACAAAGCCCCACTCTGAGATGGTCTAGAATATGTTGATGTTTTATTCTGGTTTTTTTTTTCTCCCAGGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTTTGCATGCACTAGAGCATAACACACCCACACCACCACACATGCATGCATGCATGTTTTATCTTGTTTTGTTTGAATGGGGCTTTAGAAACAAGGTTTCACTCTGTAGGTCCTGCTGGCCACAAACTCACAGCAATCCTCCTGTTTCAGCCTCCCAAGCATGGAAAAATTGCTACATACTGGGGAAATCACAGGCATGTGCTGCCATTCCTGGCTGCTTTTGATCACTCTGATACTTATCTTTGAGACCGTGGTCTTACAAAAATAATTTTGGAGACAGTGGTTTAAAGGATCTCATCCAGTCACCACATTCTGCTCGGAGGCCAGTGATAGGCTCTCTGTGATAAGGAAGACCTTGGAGTCAGAGGACTCTGTCTGCCTCCGGGCTTTGGTGCAATTGAACCGAAGCAAGGTTGGAAAGGTTGGGTCAGAGTGGAAAAGACAGAAAACAGAAAGATAAGACTGCAAATATGGGAAGCATGGGCTTGGAGAAGTCAGATGTGAATTCTAAGTGACGTGGGATTAGCTGGTGAATAACCTGACTCCCCTTTGCTTTGTACAG
Seq C2 exon
TGGTGCCGCTCTTGTTGTTGATGTGCCACTGTGGAGAGGGCGCCAAAGGCTTCGCCCCCATTCCCGGGACCATAGAGATGCTGCATCCTTGGAACAATGAAGGGGCACCACCCGAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016526:ENSRNOT00000022270:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGTGTGCTGCTGC
R:
CTTGTCCTCGGGTGGTGC
Band lengths:
350-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]