GgaINT0092708 @ galGal4
Intron Retention
Gene
ENSGALG00000007588 | GAD2
Description
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) [Source:HGNC Symbol;Acc:HGNC:4093]
Coordinates
chr2:16151590-16152913:-
Coord C1 exon
chr2:16152806-16152913
Coord A exon
chr2:16151680-16152805
Coord C2 exon
chr2:16151590-16151679
Length
1126 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CACTGTTATTCTGTGCTTAGCCT
3' ss Score
5.6
Exon sequences
Seq C1 exon
GGAACCACGGGATTTGAAGCACAAATTGATAAGTGCTTGGAACTTGCAGAATACCTGTACAACAAAATAAAGAACAGAGAAGGGTATGAAATGGTGTTTGATGGAAAG
Seq A exon
GTATGTACTATAACTGCTTTTTTCCCAATTGGTCACCTGAACTTACTGTATATACCAGGACACTGCCAACAGGTCAAACCTACAGCACATGATGGCACACAGTGCCCTTGTATCAAAACCTGTTGTTGTGCTGATGCTTTCTTAGACGATCCAGGGACAAGGCATAACTTACCAGTTTATACAGTGTCACCCCACTGAACCTAAACAGTGACATCTCAGGATAAAGCAGAACACACACAGTCAGAACCAGCTTTCAAGCAGCAAAAAGCAGTTGTCGTTTTGTAATTCCAGGGTCTGTTAGGAATGCGGGTTGCAGCACGACATGGGGCTGGTGCTGCTTGGGCTCATGTGGCAGCAGTGACACCACGTTCCTTCAAGCATGTCACTATGCAGTTTATTTCCCACACCTTGCACATCATCACTGAATTTGGTCCATCGAGTCTGATGATGGGTAGAGATACTGACAGCAGTCAGAATTGCTGTAGCTCACACATTCAGCATAGAGGAACACAGCAAGGAAAGCAACTGCTGGCAGACTGCAAAAATACACAGAATGTCAACTAATTCTGCCTTTCTGTTCAGTGCTCCCACATTAAGTTAAACTAATTAAGATGCTGTTATGCATGCATATTAATACAGAAGCTAGTGGAATCAAACAGAGCAGTAATAAATTTTATTATATATACAAAAATGTTAGACTATTTCATGTACCACCTGTGGCTACTGTTTACAGGACTGGATCCTGCATTATGCTGTCATGTAATAACAGTAAATGAGAGAGTCCTCACCTCTAAATTATCTCTGATAGTCTCTCACCTTATCCACGTATTCCCTTCAGCCTCCTGGGGGAACAGCACCTACAAAATCTAGATGCTTCTCAGCAGAGGGTAAATATATTTGCACAGCTGGGTGATGTATTTCTGCAACTGACATCCTAGGAATAAATTGCCTAAAATTATCCTTTCTGCATTAATAACGATGATGACTCTCAGTGGACCACAGTAATGAAAACCATTCATTGCTGTCACAATATGATGCATGAGAGGGGGAGAAGGCATGAGCTTAATTGCAACTGAGGTATTGTGAGCGTTTCTTACAGTGTAAACCACTGTTATTCTGTGCTTAG
Seq C2 exon
CCTCAGCACACAAACGTCTGCTTCTGGTATATACCTCCCAGCTTGCGCGGCATGGAAGACAATGAAGAAAGGATGAGCCGCCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007588:ENSGALT00000012268:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.4=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCACGGGATTTGAAGCA
R:
CTTCATGAGGCGGCTCATCC
Band lengths:
198-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]