RnoINT0063570 @ rn6
Intron Retention
Gene
ENSRNOG00000018200 | Gad2
Description
glutamate decarboxylase 2 [Source:RGD Symbol;Acc:2653]
Coordinates
chr17:89229299-89229807:+
Coord C1 exon
chr17:89229299-89229406
Coord A exon
chr17:89229407-89229717
Coord C2 exon
chr17:89229718-89229807
Length
311 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CCTATTTTCTTCTTTTTTAGCCT
3' ss Score
9.34
Exon sequences
Seq C1 exon
GGGACTACTGGATTTGAAGCTCACATTGATAAGTGTTTGGAGCTGGCAGAGTATTTATACAATATCATTAAAAACCGAGAAGGATATGAAATGGTGTTCGATGGGAAG
Seq A exon
GTATGTGCTCACATTTCAACAGTCACCATGAGCGGCTTCAATCACAGGCTTTACCCCTGGCGTTTTCTGACGTCAGAAATGTGCTTTCTGGCTAAGTGGGATCATTACAAGGGGAGACAATAGGGGTGGGATGGCTCCTTCGACCTGGAATAAAGACTGGACTCTCAGCTCTGAAGAATGTGAAAGGGAGAGGTCCAAAGGCAATTATTCATTCAAATACAGGGATTTTCTTCTGAACCTGAAGAATCAATACGGTTGAACCATACTTGGAATTTTAGACCATGTCTGAATCCTATTTTCTTCTTTTTTAG
Seq C2 exon
CCTCAGCACACAAATGTCTGCTTCTGGTTTGTACCTCCTAGTTTGCGAGTTCTGGAAGACAATGAAGAGAGAATGAGCCGCCTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018200:ENSRNOT00000024901:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.4=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTACTGGATTTGAAGCTCA
R:
CTTTGAGAGGCGGCTCATTCT
Band lengths:
198-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]