GgaINT0092709 @ galGal4
Intron Retention
Gene
ENSGALG00000007588 | GAD2
Description
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) [Source:HGNC Symbol;Acc:HGNC:4093]
Coordinates
chr2:16147743-16151679:-
Coord C1 exon
chr2:16151590-16151679
Coord A exon
chr2:16150910-16151589
Coord C2 exon
chr2:16147743-16150909
Length
680 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTGTTGATCACCACTGCAGGTG
3' ss Score
6.93
Exon sequences
Seq C1 exon
CCTCAGCACACAAACGTCTGCTTCTGGTATATACCTCCCAGCTTGCGCGGCATGGAAGACAATGAAGAAAGGATGAGCCGCCTCATGAAG
Seq A exon
GTAAGCAGCGTCTCCAGGGTGTCATGCACTGAGCAGCAAAGACATTACAGGCAGGCAGGCCCAGAAATGATCTTCAGGGTCTGGTCACCTGGCTGTATTCTGGCAGATGATACTTCCATGGTCATCTTGCTGCAGGTTAGTCTGGCACCACTCCACTTTGGCCTCCAAGTTCAGTATTCTTGAGCTGTCCTCTTCTCTAGAGTTCTTAATGGAACCCTGTGTATATTTACTGAGGTTAACGTAAACAGCAATGAGTGAAGCCCACAGAGACAGCAACGTCTATGCTCTCTGTCATACAAAAAGAAGATGGAAAACAATTGCAACTTGTTTTGAGCACCACAAGAACCAGTTACCGTGTGCTAATTGCCTGTGAGCAAAACTGAGAAAGTAGGAGGGAAATTCCCCAGCAGTTTAAAGAGCTGGACAAAGAAACTGGATAAACCCAGTATCTTTCAAATGAGCCACTTATTCCTTAGCCATTTATTCCTGAATGGAGGTTAACTGCTTTATCAATATTGGACTGATTTTCACCTTAACAGCTTCTTACATCCCTTCATCCTTACAAAAAAAAAGAGTAAAACAAAAACCAAACCCAAACAAAAACCTCTGCTTTTTAGTTATAATAATAGTAATAGTAATCATCGTCATCATCCCCTGCTTCTTGTTGATCACCACTGCAG
Seq C2 exon
GTGGCACCAGTGATAAAAGCCAGGATGATGGAATATGGGACGACCATGGTGAGCTATCAGCCTCTGGGAGACAAAGTGAACTTCTTCCGGATGGTCATCTCAAACCCAGCAGCAACTCATCAGGACATTGATTTCCTGATTGATGAAATAGAGCGCCTGGGACAAGATTTATAATAACTGGGTGTGAAAGGCTGTTCCTGGACCTCTGAGTAGACAATTAAGTTGTCACAAACTGTGCGAATGTATTTGTAGTTTGTTCCAAAGTAAATCTATTTCTATATTGTGGCGTTGGAGTAGAGTACAGTTTAAAATCAAAAAAACCATGGCTCCTTTAAAGTCCTTTCCTGAGTTTTAGAATACCTCATTAATAATTAGCTGCACAAAAAGCTGCATTGAAACAAATGAGGAAGAACAGATGTTTAAAATTTTATCCCAAATTTTAACACGGGGACTACTTTAAATTAAAAGTGGTCAGAATGAATGATGCCAAATTTGCCCAAAATGGTGACAAAATCAAACTAAGGGAATAGGGAGAGGGTAGTGAGAAACAGAGTATACAAGCCGTTTGTTTAAAAGTGGAGGTATTTTGCCTTTTTCGTAGTATTAGAACAGAATTTCTAATTTACCTATAGCAGCATTTCAAATGTATTTAAATAGGTATAGTTTTACAAAAGGAAATATATATATATATATATAAAAACCCTATTTTGTAAAATATATATTTTTGTTTTATATGGGTTATAAAACTGCAAGGACAGAAGCTGAAAATTAACTAGAATTCTTTTTCTTTTGATGGAGGTGCCTCAAATATTTATTACTGCTTATTTTAAATCACAAGCCCACATACATTCTGAAGAGGTACCCGTACCTCATTTCTCCATGTCACATGGATTGTAGGTCTCCAGGGTTGATTACTGAAAAACCTCAAGAGTACTGCAGCTCTTAAAACCACTTAATAAGATCAATTACAGTACAACAATAGGATGCTATTATTCCTAATTATGTTTCCCACTTGGCCTAACTAAGCAGACGCACAATCAATCTACAGCGCTAACCAAGACTGAAATAAGGTTGTATTTGGATGGTTTCTTTGACCTGTGGAAAAAAAGCCTATCCAAAAAAAGTCACATGTCTGAAGAAGTGCTTACATCATAACCATTTCTGCTCTGAGCAGCACAAAACTGCACAAAATATGCATTTCCTGGAATGCTTTCTAAAGAAAGCTTCGTTAAGAGGGGAAAGGCTTCTTATGGATGTACAGGTCTGCACGACAAGGCCTAAACTAAACATGACCATAATCCAGATGGCAGTGTTGGAGGTTGTTTGAGGTTGTTGTTTGAGGTGGAGTAACAAACTGTGTTGTCAAAGGTTCTCCCAGTACTGGACTATGTCCTTGTTTGCTACAACTTTTGAAATGGCAGAAAATGAATGAGCTTAGGCCGCATCTGCCTAGAACAGCCCATGCAGAGTCTCACCAGCCTTAGAAACCATGGGCACGACTCTTGCAGAACTCATGGCTGCCCCATTCCTCACCATTAGCAGTGACTCTGAGATGGCAGCTGAAGTTTATCCTCTTTTCCCCTTCAACAGCTGGAAGTGTCGGTAGGAATTACGGGGCTCAGGTCTGTCTATTTATAACCCTACAAAAGTTTTGGTTTTAACTTTGCCTATGTGGCCAACTTGTGTTTGTAAAGCAATATTGTTTTGCTGGCTCTAACATACTTGAAGAGAAAATAAAAAGTGTAATGTGCGATGTGGTTTTAATTTAATCTAAAATAAATGAAGTACTAATTCAGCATAATATCATGAGGACATGAAGTAAGAGGAAATAGTGTCTGTAATTGTGTTGCCTTTATTATATTGATAGCACTGTTTTGTCACCTCAGATTGAGGCTGTGCACTTTAGATTTAAACTGTACAATGTTGCAAATCAACATGTGTTGCTGTATAAGCTTGTACAATATATTATTGATATGTCATTATTTGTGCGGTTGTAGTATTGACTCTTGATATTGTAAGAACTGCATTTACGCCAGTCCCTCTGCTATACCTTTGCTTGGTAAGAACCTCTCCTCGTCAGCTTTTAGGCAGCCCTCACCTCACTTAGGTGTGTTGCCATTGCTACCTATGGTGCATACTGTGGTAATTTGTTCTGTAGAGGAGGTGCCAACTGTGGCAGGAAGGACTTCATGTAACCTCCTCTAGATGTGTCACATCCACCAGCCTAACCACTGAAATACTGAGTAGAGCAGCAAATTACAGTCTTTCTTGCTGTGTAAAAGGCAAGAAAAAAGAGCATAAAAGTACAAATAGAATGGGGACAATGGTGAAGGTGATCAGTAGCCTGGTTACATCTTGCATGTGCAATTCTGTTTTAAAGTACTAAGTGCATACAATATATTTATTAGCTGTGTGTGCCAATCCAAGATTCACATTCGGTGTTCCAGGAGAACCAGCATTTTTTTCCACATTACAATGTTTATTGCAGCCAGGAAAGAGCGACACAGCAACCTGTTCTTGTGTTTGACCAAAGTATCTTATCTGTGTTGTTGATCTAAATCCAAATAAAAGTGTAAAACGTGGCTGTGGGTCTTCTCATTAGCAGCACCGATGGGCACTGTGCAAAAAACAGATTTATCACGTGTGCCATTTCGGAGCAAGGCCCCAATAAAGAGAATGTTTAATTGTACCCCTTTCTGTGTCCCTGGATCCTTTTTTCACAGCAAATGCATTCTGTTGATTACTGTAACATAAAAACAGTTTCATCACCAGACCCTTTTTGAGGCTATTCTCAGAATCAGCATACAAGTGTAAATCTGCCATCTGCTGCTCCTTTACCTTATCTTTACAAGATGGATTTAGTTGCTTTATTCTCCCCAGACAAGCTCCATAATTTTTTTATGCTTTGTTTTGTCTTTTCATTCTATGAGCACTTATCCCCAAATTAACCATCAACCATAATCAGCCTACAGCACAGCAGTGAAATCAGTCAGGGCGCTTTCCAGGGCAACATGAGCTATATGATGGCAACAGTTTAAGAGGGCCATGAAATAAAGACAAAACAACTGATGGAAAAATTAAGAGTTGAGTCCTCGTGTGTCCCCTGGCCTCATTCCTCCAAAATCTGCCACCTGTCTTCCCTATTTTCCTTCCCCCATCTGAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007588:ENSGALT00000012268:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCATGGAAGACAATGAAG
R:
TGTACTCTACTCCAACGCCACA
Band lengths:
347-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]